View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-11 (Length: 798)
Name: F9350-LTR4-TNT-insertion-11
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-11 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0064 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 757; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 9 - 798
Target Start/End: Original strand, 35924269 - 35925058
Alignment:
| Q |
9 |
gacatgtctatattttgtgctaatgaaaagaagctaaaaatattaaaaggaagaggatatactaatatacctgattagcaaatccaataccaaatcctag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924269 |
gacatgtctatattttgtgctaatgaaaagaagctaaaaatattaaaaggaagaggatatactaatatacctgattagcaaatccaataccaaatcctag |
35924368 |
T |
|
| Q |
109 |
taatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgaggaacaataaacctccgaaaaacatggaaagtttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35924369 |
taatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgaggaacaataaacctccaaaaaacatggaaagtttc |
35924468 |
T |
|
| Q |
209 |
cgaccaaacctacgggtgacactcgacgccaccagtgaagacaacaacgcggctaggtacaaggacgatgtaaacatcgttaggatctggctatcgtact |
308 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924469 |
cgaccaaacctacgggtgacactcgacgccaccagcgaagacaacaacgcggctaggtacaaggacgatgtaaacatcgttaggatctggctatcgtact |
35924568 |
T |
|
| Q |
309 |
gacaatacttatttgatgacgtgcccaagtttttcttccgatacaccaatggaaaaaacttcaacagaaagggatccattgacgtcaccccacctaacca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924569 |
gacaatacttatttgatgacgtgcccaagtttttcttccgatacaccaatggaaaaaacttcaacagaaagggatccattgacgtcaccccacctaacca |
35924668 |
T |
|
| Q |
409 |
aaattcatgcaatcaaatcaaatcaaaacacatacaataaactctatagttgtaaactatcgatttcagttgcaattatgacaacaatataaaagatgag |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924669 |
aaattcatgcaatcaaatcaaatcaaaacacatacaataaactctatagttgtaaactatcgatttcagttgcaattatgacaacaatataaaagatgag |
35924768 |
T |
|
| Q |
509 |
gtctctctacaacgatatcacagtcgcatggaccaactttacacgtattttattgcaattaaaggtttacaacgtaaccgcaactataaatatatacctg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35924769 |
gtctctctacaacgatatcacagtcgcatggaccaactttacacgtattttattgcaattaaaggtttacaacgtaactgcaactataaatatatacctg |
35924868 |
T |
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| Q |
609 |
aaattccaatatcgtagccgaagattaaacctcccattgctgcaacaatgcatgttacagtaacaaaaggagtgaggttgccggggtactccttgttgcc |
708 |
Q |
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| T |
35924869 |
aaattccaatatcgtagccgaagattaaacctcccattgctgcaacaatgcatgttacagtaacaaaaggagtgaggttgccggggtactccttgttgcc |
35924968 |
T |
|
| Q |
709 |
tccgccggtgggtattcctactgcaggcattttttgcttctcagnnnnnnnctgactttggtagagagagtgaagacctatagagattta |
798 |
Q |
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| T |
35924969 |
tccgccggtgggtattcctactgcaggcattttttgcttctcagtttttttctgactttggtagagagagtgaagacctatagagattta |
35925058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 36200649 - 36200502
Alignment:
| Q |
75 |
atacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgag |
174 |
Q |
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|||||||||||||||| || |||||||| || || || |||||||| ||||||||||||||||| || | || |||||||||| ||| ||||| | || |
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| T |
36200649 |
atacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgacaag |
36200550 |
T |
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| Q |
175 |
gaacaataaacctccgaaaaacatggaaagtttccgaccaaacctacg |
222 |
Q |
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| T |
36200549 |
gaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacg |
36200502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 599 - 705
Target Start/End: Complemental strand, 36200241 - 36200135
Alignment:
| Q |
599 |
tatatacctgaaattccaatatcgtagccgaagattaaacctcccattgctgcaacaatgcatgttacagtaacaaaaggagtgaggttgccggggtact |
698 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||||| || ||||||||||||||||| |||||||||| |
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| T |
36200241 |
tatatacctgaaattccaatatcgtagccaaagatcaaaccacccatggcagcaacgatgcatgttatggtgacaaaaggagtgaggtttccggggtact |
36200142 |
T |
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| Q |
699 |
ccttgtt |
705 |
Q |
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| T |
36200141 |
ctttgtt |
36200135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 75 - 411
Target Start/End: Original strand, 17997 - 18332
Alignment:
| Q |
75 |
atacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgag |
174 |
Q |
| |
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|||||||||| ||||| || |||||||| || || || |||||||||| ||||||||||||||| ||||| || |||||||||| ||||| || ||||| |
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| T |
17997 |
atacctgattcgcaaacccgataccaaaaccaagaaagatccgaccaaggatcaacatccaaacatgttgagcaaagccattaatgagggctccgatgag |
18096 |
T |
|
| Q |
175 |
gaacaataaacctccgaaaaacatggaaagtttccgaccaaacctacgggtgacactcgacgccaccagtgaagacaacaacgcggctaggtacaaggac |
274 |
Q |
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||| | | |||||| |||| ||| |||||||||||||||||| |||| || || | || ||||||| ||| ||||||| ||| || || |||| ||| |
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| T |
18097 |
gaaaagcagacctccaaaaagcattgaaagtttccgaccaaacttacgagtcacggtggaagccaccaatgacgacaacagcgctgccagatacattgac |
18196 |
T |
|
| Q |
275 |
gatgtaaacatcgttaggatctggctatcgtactgacaatacttatttgatgacgtgcccaagtttttcttccgatacaccaatggaaaaaacttcaaca |
374 |
Q |
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||||| ||||||||||| ||||| |||||||| | |||||| | |||| | | ||||| |||||||||| || || |||| ||||||||||||| |
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| T |
18197 |
gatgtgaacatcgttagtatctgactatcgtatttacaatattggtttgtcgttctatccaag-ttttcttccggtaaactgatgggaaaaacttcaaca |
18295 |
T |
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| Q |
375 |
gaaagggatccattgacgtcaccccacctaaccaaaa |
411 |
Q |
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||| |||||||| || || ||||||||||||||||| |
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| T |
18296 |
taaatggatccatggaagttaccccacctaaccaaaa |
18332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 593 - 701
Target Start/End: Original strand, 18483 - 18591
Alignment:
| Q |
593 |
tataaatatatacctgaaattccaatatcgtagccgaagattaaacctcccattgctgcaacaatgcatgttacagtaacaaaaggagtgaggttgccgg |
692 |
Q |
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|||| |||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| || ||||||| | ||||||| || | |
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| T |
18483 |
tatatatatgtacctgaaactccaatatcgtagccgaagattaaaccacccatggctgcaaagatgcatgttacggtgacaaaagaaatgaggtttccag |
18582 |
T |
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| Q |
693 |
ggtactcct |
701 |
Q |
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| T |
18583 |
ggtactcct |
18591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 18235186 - 18235266
Alignment:
| Q |
76 |
tacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccatt |
156 |
Q |
| |
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||||||||||||| |||||||||| ||||| ||||| || |||||||| || | ||||||||| | ||| || |||||||| |
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| T |
18235186 |
tacctgattagcacatccaataccgaatccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccatt |
18235266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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