View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-3 (Length: 449)
Name: F9350-LTR4-TNT-insertion-3
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 5 - 440
Target Start/End: Original strand, 40512696 - 40513131
Alignment:
| Q |
5 |
acactaacaacagtttacatatgaaattaaattaagataccacgacacgagagtaattttgtcttattattctgtcttaagcgcttggttattcttagac |
104 |
Q |
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| T |
40512696 |
acactaacaacagtttacatatgaaattaaattaagataccacgacacgagagtaattttgtcttattattctgtcttaagcgcttggttattcttagac |
40512795 |
T |
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| Q |
105 |
atacgaagatcgccgttcttacaggaaggcttttgccaaaggccaaagatgtgtcgttctgcccagtccactaacccaggaaaaagcagcttagaaggaa |
204 |
Q |
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| T |
40512796 |
atacgaagatcgccgttcttacaggaaggcttttgccaaaggccaaagatgtgtcgttctgcccagtccactaactcaggaaaaagcagcttagaaggaa |
40512895 |
T |
|
| Q |
205 |
acaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctgatcccaatggaat |
304 |
Q |
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| T |
40512896 |
acaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctgatcccaatggaat |
40512995 |
T |
|
| Q |
305 |
ccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataagaacacacacagtagtgtaaactgcattggttgaagtttaaa |
404 |
Q |
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| T |
40512996 |
ccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataagaacacacacagtagtgtaaactgcattggttgaagtttaaa |
40513095 |
T |
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| Q |
405 |
ttaaaggaggtgtaatattatgcatggaaccaattg |
440 |
Q |
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| T |
40513096 |
ttaaaggaggtgtaatattatgcatggaaccaattg |
40513131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 40526871 - 40526966
Alignment:
| Q |
212 |
tttgagccatgaagggtt----tgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctgatcccaatggaa |
303 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||| || ||| |||||||||| |
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| T |
40526871 |
tttgagccatgaagggttggtttgtcacataaatatctcccctgcatgcacctttcactatgtctttggcacattcaactgatgaacccaatggaa |
40526966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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