View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-7 (Length: 162)
Name: F9350-LTR4-TNT-insertion-7
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 28811838 - 28811696
Alignment:
| Q |
10 |
ataaaattagaatgtgaaagaagctcttcttggttcttaccttatcttatctgattcaaagataatgacgccaattgaatggacaacacaaatttgcgtg |
109 |
Q |
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| T |
28811838 |
ataaaattagaatgtgaaagaagctcttcttggttcttaccttatcttatctgattcaaagataatgacgccaattgaatggacaacacaaatttgcgtg |
28811739 |
T |
|
| Q |
110 |
ccctgacttattaaactgaattgaaatccactagaataaatta |
152 |
Q |
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| T |
28811738 |
ccctgacttattaaactgaattgaaatccactagaataaatta |
28811696 |
T |
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