View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-8 (Length: 635)
Name: F9350-LTR4-TNT-insertion-8
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Complemental strand, 9126629 - 9126014
Alignment:
| Q |
10 |
acctttggtttagaagttaataattgcgccataatgtacattttataaccaatggtcctcttgaaaaaattattgattgattgaatcttgtcatccgcag |
109 |
Q |
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| T |
9126629 |
acctttggtttagaagttaataattgcgccataatgtacattttataaccaatggttctcttgaaaaaattattgattgattgaatcttgtcatccgcag |
9126530 |
T |
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| Q |
110 |
aatcttttgaggcgtgaggccgaggacgactgtcgtatcatgtagagatgttgatgaaatttacatcatggtcgtgaggcgtgagacactgaagctgcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126529 |
aatcttttgaggcgtgaggccgaggacgactgtcgtatcatgtagagatgttgatgaaatttacatcatggtcgtgaggcgtgagacactgaagctgcca |
9126430 |
T |
|
| Q |
210 |
agtaatgttcactaatggatgaggttgttttatctgttctagacttctagtttagtcacgtatcagtagaatgttggttattacaacagtactttcttta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126429 |
agtaatgttcactaatggatgaggttgttttatctgttctagacttctagtttagtcacgtatcagtagaatgttggttattacaacagtactttcttta |
9126330 |
T |
|
| Q |
310 |
gttttgtaattgtttaaattgcatcgttttctagataatcatataacatagtacctctatcagcagtttgtatatatatccattgaaatggaatatggat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126329 |
gttttgtaattgtttaaattgcatcgttttctagataatcatataacatagtacctctatcagcagtttgtatatatatccattgaaatggaatatggat |
9126230 |
T |
|
| Q |
410 |
gtttgataatatagaaaggttgatgaaatacaaatctatatcatgggatctgttttatttgatgtggcacatgtgattctttctagctctcaccttgctc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126229 |
gtttgataatatagaaaggttgatgaaatacaaatctatatcatgggatctgttttatttgatgtggcacatgtgattctttctagctctcaccttgctc |
9126130 |
T |
|
| Q |
510 |
ctcatgattgttgttgactcaacatcttgttattttttgcctaattaaaagtttagatgagttgagcgactcgacgtctagttactgatactatgaaatt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126129 |
ctcatgattgttgttgactcaacatcttgttattttttgcctaattaaaagtttagatgagttgagcgactcgacgtctagttactgatactatgaaatt |
9126030 |
T |
|
| Q |
610 |
gacttactatatatta |
625 |
Q |
| |
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| T |
9126029 |
gacttactatatatta |
9126014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 9132626 - 9132576
Alignment:
| Q |
79 |
ttattgattgattgaatcttgtcatccgcagaatcttttgaggcgtgaggc |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9132626 |
ttattgattgattgaatcttgtcatctgcagaatcttttgaggcgtgaggc |
9132576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 9132458 - 9132359
Alignment:
| Q |
270 |
tatcagtagaatgttggttattacaacagtactttctttagttttgtaattgtttaaattgcatcgttttctagataatcatataacatagtacctctat |
369 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| | |||||| ||| ||||| | | ||||||||||||| |
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| T |
9132458 |
tatcagtagaatgtt---tattccaacagtactttctttagttttgtagttgtttgaattgctttgttttccagaaaatcaaagacaatagtacctctat |
9132362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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