View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9350-LTR4-TNT-insertion-9 (Length: 784)
Name: F9350-LTR4-TNT-insertion-9
Description: F9350-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9350-LTR4-TNT-insertion-9 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 345 - 784
Target Start/End: Original strand, 28962214 - 28962653
Alignment:
| Q |
345 |
ctctgaattgttccacaacaaattcatcactgatccgattccggaaaaatgcagcaaggacttttacttgccagattctgacgacaaagttaaagacttc |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962214 |
ctctgaattgttccacaacaaattcatcactgatccgattccggaaaaatgcagcaaggacttttacttgccagattctgacgacaaagttaaagacttc |
28962313 |
T |
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| Q |
445 |
agattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttgccggactcaggtgataaaggtgatgatgacagtt |
544 |
Q |
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| T |
28962314 |
agattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttgccggactcaggtgataaaggtgatgatgacagtt |
28962413 |
T |
|
| Q |
545 |
tagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaaaagtggcacttggactgcaaggattgtgaaagcaga |
644 |
Q |
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| T |
28962414 |
tagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaaaagtggcacttggactgcaaggattgtgaaagcaga |
28962513 |
T |
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| Q |
645 |
accatttcgtaacaatggcggtttttgtggtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaacattcaatgatagagct |
744 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962514 |
accatttcgtaacaatggcggtttttgtggtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaacattcaatgatagagct |
28962613 |
T |
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| Q |
745 |
tcattgaagagagaaaaatcaatgagtcctgaagaattga |
784 |
Q |
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| T |
28962614 |
tcattgaagagagaaaaatcaatgagtcctgaagaattga |
28962653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 28961879 - 28962149
Alignment:
| Q |
11 |
ctcatttccataggaatcatttcaactcttattttgttcaaagttgcaataattccgtacacatttgatcttgttctttcaactcttcctcaactttggt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28961879 |
ctcatttccataggaatcatttcaactcttattttgttcaaagttgcaataattccgtacacatttgatcttgttctttcaactcttcctcaactttggt |
28961978 |
T |
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| Q |
111 |
tctcaataagaacatggtttacacttcctttcctttacatcattgttaacttcatcattattatcattgtagcttcttcaagcttttctgatccaaaaca |
210 |
Q |
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| T |
28961979 |
tctcaataagaacatggtttacacttcctttcctttacatcattgttaacttcatcattattatcattgtagcttcttcaagcttttctgatccaaaaca |
28962078 |
T |
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| Q |
211 |
cacaacaacaagcattttagaaactaccaccaacccaattgagctagaaaaccaaaccaatgaaccacatc |
281 |
Q |
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| T |
28962079 |
cacaacaacaagcattttagaaactaccaccaacccaattgagctagaaaaccaaaccaatgaaccacatc |
28962149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 389 - 784
Target Start/End: Original strand, 29001978 - 29002382
Alignment:
| Q |
389 |
aaaaatgcagcaagga---cttttacttgccagattctgacgacaaagttaaagacttcagattattctgcaacaaattcatcgatgatccatcaccgga |
485 |
Q |
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|||||||||||||||| || || |||| |||||||||| || |||||||||||||| ||| |||| ||||||||||||| ||||||| || ||| |
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| T |
29001978 |
aaaaatgcagcaaggaggactattccttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacagga |
29002077 |
T |
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| Q |
486 |
aaaatgttgcaacgattataacttgccggactcaggtgataaaggtgatgatgacagtttagaagcaacatggaaagcaataatggaagcacaggagaaa |
585 |
Q |
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|||| | |||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||| |
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| T |
29002078 |
aaaacgctgcaacgattataactccccggattccggcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaagagaaa |
29002177 |
T |
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| Q |
586 |
acaaagaagccacatctgaagaaaagtggcacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatg------gcggtttttgtggtggtg |
679 |
Q |
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|||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |||||| |
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| T |
29002178 |
acaaagaagccatatctaaagaaaagtgacacttggactgcaaggattgtgaaagccgaaccatttcgtaacaatggtggttgtggttttggtagtggtg |
29002277 |
T |
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| Q |
680 |
atgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaacattcaatgatagagcttcattgaagagagaaaaatcaatgagtcctgaaga |
779 |
Q |
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| T |
29002278 |
atgatgatcctgttgcttgggctgaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaaaagagaaaaatcaatgagtcctgagga |
29002377 |
T |
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| Q |
780 |
attga |
784 |
Q |
| |
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| T |
29002378 |
attga |
29002382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 29001566 - 29001746
Alignment:
| Q |
11 |
ctcatttccataggaatcatttcaactcttattttgttcaaagttgcaataattccgtacacatttgatcttgttctttcaactcttcctcaactttggt |
110 |
Q |
| |
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||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29001566 |
ctcatgtctataggaatcatctcaactcttattttgttcaaagttgcaataattccatacacatttgatcttgttctttcaactcttcctcaactttggt |
29001665 |
T |
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| Q |
111 |
tctcaataagaacatggtttacacttcctttcctttacatcattgttaacttcatcattattatcattgtagcttcttcaa |
191 |
Q |
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| T |
29001666 |
tctcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtattttcttcaa |
29001746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 29001796 - 29001863
Alignment:
| Q |
214 |
aacaacaagcattttagaaactaccaccaacccaattgagctagaaaaccaaaccaatgaaccacatc |
281 |
Q |
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|||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
29001796 |
aacaaccaccattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaaccacatc |
29001863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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