View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9353-LTR4-TNT-insertion-5 (Length: 391)
Name: F9353-LTR4-TNT-insertion-5
Description: F9353-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9353-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 25453866 - 25453765
Alignment:
| Q |
7 |
acattttcataagctgttttcataaattctcagagtatcacaaaaattggaagaagaaaggcaattgcagcaagaaatctaaactcatgactcagaacag |
106 |
Q |
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| T |
25453866 |
acattttcataagctgttttcataaattctcagagtatcacaaaaattggaagaagaaaggcaattgcagcaagaaatctaaactcatgactcagaacag |
25453767 |
T |
|
| Q |
107 |
tt |
108 |
Q |
| |
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|| |
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| T |
25453766 |
tt |
25453765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 25453543 - 25453482
Alignment:
| Q |
330 |
gtgatggtgatggtgatgcttgcttaaacatataaagaaagaacaaaacatggatattctga |
391 |
Q |
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| T |
25453543 |
gtgatggtgatggtgatgcttgcttaaacatataaagaaagaacaaaacatggatattctga |
25453482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 25453633 - 25453581
Alignment:
| Q |
240 |
gggtataagtataacatagtttgaccaaatataaaatcataccttggttcaac |
292 |
Q |
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| T |
25453633 |
gggtataagtataacatagtttgaccagatataagatcataccttggttcaac |
25453581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 38149371 - 38149335
Alignment:
| Q |
13 |
tcataagctgttttcataaattctcagagtatcacaa |
49 |
Q |
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| T |
38149371 |
tcataagctattttcataaattctcagagtatcacaa |
38149335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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