View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9353-LTR4-TNT-insertion-6 (Length: 224)
Name: F9353-LTR4-TNT-insertion-6
Description: F9353-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9353-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 10056883 - 10056676
Alignment:
| Q |
8 |
aaaataggatacacaccgaccgtgtaaatccaaactatactccactttatggtatatgtgcataaatatatatagttattcttattagatgttagtattt |
107 |
Q |
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| T |
10056883 |
aaaataggatacacaccgaccgtgtaaatccaaactatactccactttatggtatatgtgcataaatatatatagttattcttattagatgttagtattt |
10056784 |
T |
|
| Q |
108 |
acacagtcacataatatatccattaaactgaaacttatatgggtcatttgatgaattttatttgtatacacaatcattgcggatatattttacaccgtca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10056783 |
acacagtcacataatatatccattaaactgaaacttatatgggtcatttgatgaattttatttgtatacacaatcattgcggatatattttacaccgtca |
10056684 |
T |
|
| Q |
208 |
atcaattg |
215 |
Q |
| |
|
|||||||| |
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|
| T |
10056683 |
atcaattg |
10056676 |
T |
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