View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9353-LTR4-TNT-insertion-7 (Length: 196)
Name: F9353-LTR4-TNT-insertion-7
Description: F9353-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9353-LTR4-TNT-insertion-7 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 6e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 32714656 - 32714804
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32714656 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
32714755 |
T |
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| Q |
110 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32714756 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
32714804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 10640948 - 10640803
Alignment:
| Q |
13 |
aagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccggagc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10640948 |
aagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacgttgtggctggtttgttggatttgaacccggagc |
10640849 |
T |
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| Q |
113 |
agtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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| T |
10640848 |
agtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
10640803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 22905019 - 22904871
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
109 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22905019 |
cagaagcatcatcgttatacttcaccctttttcccccacgctttctggtcctataattagtagaatcacgttgtggctggtttgttggatttgaacccgg |
22904920 |
T |
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| Q |
110 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22904919 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
22904871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 21533047 - 21533077
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcaccctttt |
40 |
Q |
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| T |
21533047 |
cagaagcatcatcgttatacttcaccctttt |
21533077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 26664753 - 26664605
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
109 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
26664753 |
cagaagcatcatcgttatacttcaccctttttcccccacgctttccggtcctataattagtagaatcacgttgtgactggtttgttggatttgaacccgg |
26664654 |
T |
|
| Q |
110 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664653 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
26664605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 4005 - 4154
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggct-ggtttgttggatttgaacccg |
108 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
4005 |
cagaagcatcatcgttatacttcaccctttttcccccacgctttccggtcctataattagtagaatcacgttgtggctgggtttgatggatttgaacccg |
4104 |
T |
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| Q |
109 |
gagcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4105 |
gagcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
4154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 5668795 - 5668943
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
109 |
Q |
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|
||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| | | || ||||||||| ||||||| ||||| |
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| T |
5668795 |
cagaagcatcatcattatacttcaccctttttcccccacgctttccggtcctatgattagtagaatcacgtggaggttggtttgttagatttgatcccgg |
5668894 |
T |
|
| Q |
110 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
5668895 |
agcagtagtgttagctgcgggtgtttctggcacctgcgactcaaaattc |
5668943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 13339260 - 13339408
Alignment:
| Q |
10 |
cagaagcatcatcgttatacttcacccttttccccccacgctttctggtcctataattagtagaatcacattgtggctggtttgttggatttgaacccgg |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| | | || ||||||||| ||||||| ||||| |
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| T |
13339260 |
cagaagcatcatcattatacttcaccctttttcccccacactttccggtcctatgattagtagaatcacgtggaggttggtttgttagatttgatcccgg |
13339359 |
T |
|
| Q |
110 |
agcagtagtgttagctgtgggtgtttctggcatctgcgactcaaaattc |
158 |
Q |
| |
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||||||| |||||| || |||||||||||||| |||||||||||||||| |
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|
| T |
13339360 |
agcagtaatgttagatgcgggtgtttctggcacctgcgactcaaaattc |
13339408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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