View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9354-LTR4-TNT-insertion-1 (Length: 160)
Name: F9354-LTR4-TNT-insertion-1
Description: F9354-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9354-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 8e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 8e-75
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 19797013 - 19797154
Alignment:
| Q |
10 |
aagttgaggcatatcaagaagaagtttaaaaagcttaatgagcgactgcgatttctaaactctcaaaagtgattgcgattctacagctatttctaaacta |
109 |
Q |
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| T |
19797013 |
aagttgaggcatatcaagaagaagtttaaaaagcttaatgagcgactgcgatttctaaactctcaaaagtgattgcgattctacagctatttctaaacta |
19797112 |
T |
|
| Q |
110 |
tcaaaagcgattgcgatttctgcaacaacacaaacgcaattg |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19797113 |
tcaaaagcgattgcgatttctgcaacaacacaaacgcaattg |
19797154 |
T |
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