View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9354-LTR4-TNT-insertion-6 (Length: 610)

Name: F9354-LTR4-TNT-insertion-6
Description: F9354-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9354-LTR4-TNT-insertion-6
F9354-LTR4-TNT-insertion-6
[»] chr4 (55 HSPs)
chr4 (7-600)||(50203632-50204225)
chr4 (428-598)||(13398527-13398696)
chr4 (462-533)||(44157726-44157796)
chr4 (552-600)||(10351986-10352034)
chr4 (552-600)||(29319443-29319491)
chr4 (552-600)||(17510329-17510377)
chr4 (552-600)||(28876404-28876452)
chr4 (552-600)||(30076741-30076789)
chr4 (552-600)||(33135534-33135582)
chr4 (552-600)||(36381439-36381487)
chr4 (552-600)||(40530114-40530162)
chr4 (552-600)||(44157653-44157701)
chr4 (428-533)||(33135403-33135510)
chr4 (552-593)||(1818691-1818732)
chr4 (555-600)||(13013218-13013263)
chr4 (426-508)||(13390416-13390498)
chr4 (555-600)||(20130258-20130303)
chr4 (555-600)||(47501803-47501848)
chr4 (552-600)||(13390537-13390585)
chr4 (552-600)||(25931783-25931831)
chr4 (553-600)||(26449722-26449769)
chr4 (421-508)||(17510209-17510296)
chr4 (421-512)||(40530198-40530289)
chr4 (555-600)||(26438371-26438416)
chr4 (462-533)||(28876312-28876380)
chr4 (555-600)||(34406376-34406421)
chr4 (555-600)||(43356934-43356979)
chr4 (463-512)||(48131094-48131143)
chr4 (552-600)||(3291987-3292035)
chr4 (552-600)||(6236488-6236536)
chr4 (552-600)||(6689327-6689375)
chr4 (552-592)||(7769593-7769633)
chr4 (421-510)||(20130356-20130445)
chr4 (421-510)||(26438240-26438329)
chr4 (552-600)||(30215836-30215884)
chr4 (421-510)||(34406245-34406334)
chr4 (552-600)||(35546980-35547028)
chr4 (552-600)||(37577779-37577827)
chr4 (552-600)||(42332863-42332911)
chr4 (552-600)||(43142675-43142723)
chr4 (421-510)||(43357022-43357111)
chr4 (556-600)||(48990300-48990344)
chr4 (465-512)||(25931866-25931913)
chr4 (462-512)||(12211126-12211176)
chr4 (470-512)||(36381351-36381393)
chr4 (562-599)||(30110991-30111028)
chr4 (421-510)||(13013306-13013395)
chr4 (465-533)||(29995004-29995071)
chr4 (465-512)||(6236581-6236628)
chr4 (428-507)||(26449810-26449889)
chr4 (467-508)||(31002632-31002673)
chr4 (462-507)||(37577885-37577930)
chr4 (467-507)||(4325641-4325681)
chr4 (468-512)||(17359357-17359401)
chr4 (468-512)||(53692940-53692984)
[»] chr1 (22 HSPs)
chr1 (462-533)||(17446395-17446464)
chr1 (552-600)||(23314023-23314071)
chr1 (552-600)||(32981148-32981196)
chr1 (552-600)||(7434451-7434499)
chr1 (552-600)||(11957448-11957496)
chr1 (552-600)||(15209378-15209426)
chr1 (553-600)||(3829981-3830028)
chr1 (421-512)||(320668-320759)
chr1 (552-600)||(17446322-17446370)
chr1 (426-505)||(41971253-41971332)
chr1 (462-507)||(11957345-11957390)
chr1 (467-512)||(25017611-25017656)
chr1 (426-512)||(42309903-42309989)
chr1 (552-600)||(35908585-35908633)
chr1 (462-512)||(170352-170404)
chr1 (467-512)||(26272834-26272879)
chr1 (555-600)||(42310031-42310076)
chr1 (568-600)||(33490409-33490441)
chr1 (465-512)||(32981048-32981095)
chr1 (467-506)||(40864623-40864662)
chr1 (462-512)||(33490462-33490512)
chr1 (563-596)||(41971356-41971389)
[»] chr7 (27 HSPs)
chr7 (462-533)||(36659262-36659332)
chr7 (552-600)||(3113212-3113260)
chr7 (552-600)||(34468424-34468472)
chr7 (553-600)||(5556491-5556538)
chr7 (552-600)||(36631845-36631893)
chr7 (553-600)||(33686561-33686608)
chr7 (421-512)||(36631939-36632030)
chr7 (555-600)||(14775688-14775733)
chr7 (555-600)||(15226141-15226186)
chr7 (552-600)||(7003655-7003703)
chr7 (552-600)||(7049526-7049574)
chr7 (552-600)||(8395153-8395201)
chr7 (552-600)||(36659189-36659237)
chr7 (552-600)||(37001329-37001377)
chr7 (552-600)||(38637472-38637520)
chr7 (552-600)||(8866821-8866869)
chr7 (552-600)||(26625773-26625821)
chr7 (552-600)||(43183559-43183607)
chr7 (465-512)||(8395288-8395335)
chr7 (463-508)||(11019610-11019655)
chr7 (567-600)||(11019694-11019727)
chr7 (467-512)||(25491539-25491584)
chr7 (469-533)||(7003727-7003788)
chr7 (469-533)||(7049598-7049659)
chr7 (467-508)||(9557917-9557958)
chr7 (468-508)||(9230628-9230668)
chr7 (476-512)||(18375628-18375664)
[»] chr2 (32 HSPs)
chr2 (462-600)||(8058345-8058481)
chr2 (552-600)||(42443014-42443062)
chr2 (552-600)||(771763-771811)
chr2 (552-600)||(2286929-2286977)
chr2 (552-600)||(16406158-16406206)
chr2 (552-600)||(17444125-17444173)
chr2 (552-600)||(18982573-18982621)
chr2 (553-600)||(26161824-26161871)
chr2 (555-600)||(6402896-6402941)
chr2 (552-600)||(31580826-31580874)
chr2 (556-600)||(32126282-32126326)
chr2 (557-600)||(35963719-35963762)
chr2 (420-522)||(26161697-26161799)
chr2 (555-600)||(41250725-41250770)
chr2 (421-510)||(6402768-6402857)
chr2 (552-600)||(45419611-45419659)
chr2 (553-600)||(4554394-4554441)
chr2 (462-512)||(4554336-4554386)
chr2 (466-512)||(26238698-26238744)
chr2 (465-523)||(42443086-42443144)
chr2 (462-512)||(45122219-45122269)
chr2 (462-511)||(17035753-17035802)
chr2 (462-511)||(17090264-17090313)
chr2 (465-510)||(17444031-17444076)
chr2 (470-511)||(31393021-31393062)
chr2 (560-600)||(26238644-26238684)
chr2 (462-505)||(7071563-7071606)
chr2 (560-591)||(26656305-26656336)
chr2 (462-493)||(34907880-34907911)
chr2 (552-590)||(12755946-12755984)
chr2 (465-507)||(41250632-41250674)
chr2 (467-512)||(19951737-19951782)
[»] chr8 (27 HSPs)
chr8 (421-511)||(27046929-27047019)
chr8 (552-600)||(3647881-3647929)
chr8 (552-601)||(27046840-27046889)
chr8 (555-600)||(29727477-29727522)
chr8 (462-533)||(7279129-7279199)
chr8 (553-600)||(42231935-42231982)
chr8 (462-512)||(3436318-3436368)
chr8 (421-508)||(23403188-23403275)
chr8 (555-600)||(24019483-24019528)
chr8 (555-600)||(28524228-28524273)
chr8 (552-593)||(36409520-36409561)
chr8 (555-600)||(39915544-39915589)
chr8 (560-600)||(3436263-3436303)
chr8 (552-600)||(15839306-15839354)
chr8 (560-600)||(40469965-40470005)
chr8 (553-600)||(23403097-23403144)
chr8 (557-600)||(29632416-29632459)
chr8 (465-512)||(42447149-42447196)
chr8 (555-600)||(34135898-34135943)
chr8 (552-600)||(4405037-4405085)
chr8 (552-600)||(16787115-16787163)
chr8 (421-510)||(28524312-28524401)
chr8 (425-510)||(29727349-29727434)
chr8 (556-600)||(7279055-7279099)
chr8 (421-510)||(29632502-29632591)
chr8 (462-512)||(40469901-40469951)
chr8 (467-512)||(40145915-40145960)
[»] chr6 (10 HSPs)
chr6 (552-600)||(29744299-29744347)
chr6 (552-600)||(34947916-34947964)
chr6 (555-600)||(33228444-33228489)
chr6 (555-600)||(399647-399692)
chr6 (556-600)||(13838828-13838872)
chr6 (421-509)||(399731-399819)
chr6 (552-600)||(28997758-28997806)
chr6 (562-600)||(31028054-31028092)
chr6 (467-508)||(11971188-11971229)
chr6 (468-512)||(32441880-32441924)
[»] chr5 (31 HSPs)
chr5 (552-600)||(10036936-10036984)
chr5 (552-600)||(13819006-13819054)
chr5 (552-600)||(16155920-16155968)
chr5 (552-600)||(16332990-16333038)
chr5 (552-600)||(36292710-36292758)
chr5 (552-600)||(39435729-39435777)
chr5 (552-600)||(39656617-39656665)
chr5 (552-600)||(43069875-43069923)
chr5 (555-600)||(26282410-26282455)
chr5 (426-523)||(13819077-13819174)
chr5 (552-600)||(17331086-17331134)
chr5 (552-600)||(19986473-19986521)
chr5 (552-600)||(36292385-36292433)
chr5 (552-599)||(1775468-1775515)
chr5 (462-509)||(31500716-31500763)
chr5 (426-529)||(39656488-39656591)
chr5 (420-510)||(36292572-36292662)
chr5 (427-512)||(1775337-1775422)
chr5 (552-600)||(12277945-12277993)
chr5 (421-510)||(26282281-26282370)
chr5 (560-596)||(28801908-28801944)
chr5 (552-600)||(37255661-37255709)
chr5 (467-512)||(1280806-1280851)
chr5 (552-600)||(31681395-31681443)
chr5 (552-600)||(33431349-33431397)
chr5 (465-512)||(28801958-28802005)
chr5 (462-508)||(192858-192904)
chr5 (562-591)||(1280761-1280790)
chr5 (465-530)||(16156001-16156066)
chr5 (481-529)||(19986552-19986600)
chr5 (468-512)||(27168709-27168753)
[»] chr3 (22 HSPs)
chr3 (552-600)||(34083211-34083259)
chr3 (553-600)||(27936180-27936227)
chr3 (553-600)||(40080832-40080879)
chr3 (555-600)||(6268514-6268559)
chr3 (555-600)||(22967536-22967581)
chr3 (553-600)||(35515025-35515072)
chr3 (552-593)||(19391182-19391223)
chr3 (555-600)||(39772820-39772865)
chr3 (563-600)||(45336887-45336924)
chr3 (552-600)||(6929984-6930032)
chr3 (552-600)||(11017360-11017408)
chr3 (552-600)||(45184009-45184057)
chr3 (428-522)||(27936252-27936346)
chr3 (467-512)||(43137351-43137396)
chr3 (556-600)||(19564610-19564654)
chr3 (462-508)||(1185542-1185589)
chr3 (465-508)||(34083119-34083162)
chr3 (562-600)||(1185609-1185647)
chr3 (465-510)||(39772906-39772951)
chr3 (564-600)||(5136322-5136358)
chr3 (463-507)||(5136380-5136424)
chr3 (426-510)||(19564480-19564562)
[»] scaffold0154 (2 HSPs)
scaffold0154 (553-600)||(32244-32291)
scaffold0154 (419-512)||(32298-32390)
[»] scaffold0002 (2 HSPs)
scaffold0002 (555-600)||(479549-479594)
scaffold0002 (421-509)||(479418-479506)
[»] scaffold0069 (2 HSPs)
scaffold0069 (552-600)||(18588-18636)
scaffold0069 (421-510)||(18684-18773)
[»] scaffold0178 (2 HSPs)
scaffold0178 (426-488)||(21949-22011)
scaffold0178 (426-488)||(27451-27513)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Original strand, 50203632 - 50204225
Alignment:
Q  7 aagaaagcattcatgtagcatagaaatgttggataaaagaatttaatgagcagaagaagaaggtgctaccatttgtgcgcccacgttttgaggggccgta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50203632 aagaaagcattcatgtagcatagaaatgttggataaaagaatttaatgagcagaagaagaaggtgctaccatttgtgcgcccacgttttgaggggccgta 50203731  T
Q  107 gtacctctctttcgcagttattgctttgccaaaaacaggatgaatgttgatgagacaagtgtgaatgnnnnnnntcattgatgaaaaagtaaatgttaga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  50203732 gtacctctctttcgcagttattgctttgccaaaaacaggatgaatgttgatgagacaagtgtgaatgaaaaaaatcattgatgaaaaagtaaatgttaga 50203831  T
Q  207 aaaagatttacttcatgccttgagattgagatttttggtgaaaatgttatgtacaaacaaactcatatgtctggttgcttttattatttgcaaaaacttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50203832 aaaagatttacttcatgccttgagattgagatttttggtgaaaatgttatgtacaaacaaactcatatgtctggttgcttttattatttgcaaaaacttc 50203931  T
Q  307 gtcccaccaataatcgaatttgtaagaatgagttacgatcaatataaaaatgtaatatggtattagaatctattgacttgtgccatccaccaccatttat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50203932 gtcccaccaataatcgaatttgtaagaatgagttacgatcaatataaaaatgtaatatggtattagaatctattgacttgtgccatccaccaccatttat 50204031  T
Q  407 gttcgcacatcaaccagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaa 506  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  50204032 gttcgcacatcaaccagtggcggagccaggaaatttatggagctcaggaaaaaaatttatcgcaaatttacatgtgacataatatatcaacagtcataaa 50204131  T
Q  507 tcgaaacattattttttaattttaattnnnnnnnnnnnnnnnnnngaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50204132 tcgaaacattattttttaattttaattaaaaaaatcaaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 50204225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 428 - 598
Target Start/End: Original strand, 13398527 - 13398696
Alignment:
Q  428 ggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaatt 527  Q
    |||||||||||||||||| || || ||       ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13398527 ggagccaggaaatttatgaagttcgggcaaaaaatttatcgtaaattcacatgtgacataatatatcaacagtcataaatcgaaatatt-ttttttaatt 13398625  T
Q  528 ttaattnnnnnnnnnnnnnnnnnngaggtttatcattttgtcaacaaaagtacaatttaaaatagggttat 598  Q
    ||||||                  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13398626 ttaattaaaaaaatcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattat 13398696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 44157796 - 44157726
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  44157796 tttatcgcaaattcacatgtgacataatatatcaacagttataaattgaaacatt-ttttttaattttaatt 44157726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 10351986 - 10352034
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10351986 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 10352034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 29319443 - 29319491
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29319443 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 29319491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 17510329 - 17510377
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17510329 gaggtttatcattttgtcaacaaaagtacaatttaaaataaggttatta 17510377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 28876404 - 28876452
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28876404 gaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 28876452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 30076741 - 30076789
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30076741 gaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 30076789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 33135534 - 33135582
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33135534 gaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 33135582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 36381439 - 36381487
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36381439 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 36381487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 40530162 - 40530114
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40530162 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 40530114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 44157701 - 44157653
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44157701 gaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 44157653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 533
Target Start/End: Original strand, 33135403 - 33135510
Alignment:
Q  428 ggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaaca--ttattttttaa 525  Q
    |||||||| ||||||||||||||| |        |||||| |||||| ||||||||||||||||||||||||||||||||| ||| |  || ||||||||    
T  33135403 ggagccagaaaatttatggagctcggacaaaaaatttatcacaaattcacatgtgacataatatatcaacagtcataaatcaaaatatttttttttttaa 33135502  T
Q  526 ttttaatt 533  Q
    ||||||||    
T  33135503 ttttaatt 33135510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 552 - 593
Target Start/End: Complemental strand, 1818732 - 1818691
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1818732 gaggtttatcattttgtcaacaaaagtacaatttaaaatagg 1818691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 13013263 - 13013218
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  13013263 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 13013218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 508
Target Start/End: Original strand, 13390416 - 13390498
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||||||||||||||||||| ||||| ||       || |||| ||||| |||||||||||||||||||||||||||||||||    
T  13390416 gcggagccaggaaatttatgaagctctggcaaaaaattaatcgtaaattcacatgtgacataatatatcaacagtcataaatc 13390498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 20130303 - 20130258
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  20130303 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 20130258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 47501848 - 47501803
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  47501848 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 47501803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 13390537 - 13390585
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13390537 gaggtttatcattttatcaacaaaagtacaatttaaaataggattatta 13390585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 25931831 - 25931783
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  25931831 gaggtttatcattttgttaacaaaagtgcaatttaaaatagggttatta 25931783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 26449769 - 26449722
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26449769 aggtttatcattttgtcaacaaaagtacaatgtaaaataggattatta 26449722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 508
Target Start/End: Original strand, 17510209 - 17510296
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||| |||||||||||||||||||||||| | ||       || |||| ||||| |||||||||||||||||| ||||||||||||||    
T  17510209 cagtggcggagccaggaaatttatggagcacgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatc 17510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 512
Target Start/End: Complemental strand, 40530289 - 40530198
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| |||||||||||||||||||||||| |  |       || |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  40530289 cagtggcggagccaggaaatttatggagccctagcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcgaaa 40530198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 26438371 - 26438416
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  26438371 gtttatcattttatcaacaaaaggacaatttaaaatagggttatta 26438416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 533
Target Start/End: Original strand, 28876312 - 28876380
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    ||||| ||||| |||||||||||||||| ||||||| ||||||||||||   ||| ||||||||||||||||    
T  28876312 tttattgcaaaattacatgtgacataatgtatcaacggtcataaatcga---atttttttttaattttaatt 28876380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 34406376 - 34406421
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  34406376 gtttatcattttatcaacaaaaggacaatttaaaatagggttatta 34406421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 43356979 - 43356934
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  43356979 gtttatcattttatcaacaaaaggacaatttaaaatagggttatta 43356934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 48131143 - 48131094
Alignment:
Q  463 ttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||||    
T  48131143 ttatcgcaaattaacatgtgacataatatataaacattcataaatcgaaa 48131094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 3291987 - 3292035
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  3291987 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 3292035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 6236536 - 6236488
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  6236536 gaggtttatcattttatcaacaaaaatacaatttaaaatacggttatta 6236488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 6689327 - 6689375
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  6689327 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 6689375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 592
Target Start/End: Complemental strand, 7769633 - 7769593
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatag 592  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  7769633 gaggtttatcattttgtcaataaaagtacaatttaaaatag 7769593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 20130445 - 20130356
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  20130445 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 20130356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 26438240 - 26438329
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  26438240 cagtggcggagccaggaaatttatggagcctgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 26438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 30215836 - 30215884
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  30215836 gaggtttatcattttgtcaataaaagtacaatttcaaataggattatta 30215884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 34406245 - 34406334
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  34406245 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 34406334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 35547028 - 35546980
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  35547028 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 35546980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 37577827 - 37577779
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  37577827 gaggtttatcattttgtcaacaaaaatacaatttaaattaggattatta 37577779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 42332863 - 42332911
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  42332863 gaggtttatcaatttgtcaataaaagtacaatttaaaataggattatta 42332911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 43142675 - 43142723
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  43142675 gaggtttatcaatttgtcaataaaagtacaatttaaaataggattatta 43142723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 43357111 - 43357022
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  43357111 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 43357022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 48990344 - 48990300
Alignment:
Q  556 tttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  48990344 tttatcattttgtcaataaaagtacaatttaaaatagagttatta 48990300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 25931913 - 25931866
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  25931913 atcgtaaattcacatgtgacataatatataaacagtcataaatcgaaa 25931866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 12211126 - 12211176
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||||    
T  12211126 tttatcgcaaattcacatgtgacataatatataaataatcataaatcgaaa 12211176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 36381351 - 36381393
Alignment:
Q  470 aaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  36381351 aaattcacatgtgacataatatataaacagtcataaatcgaaa 36381393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 562 - 599
Target Start/End: Complemental strand, 30111028 - 30110991
Alignment:
Q  562 attttgtcaacaaaagtacaatttaaaatagggttatt 599  Q
    |||||||||||||||||||||||||||||| |||||||    
T  30111028 attttgtcaacaaaagtacaatttaaaatatggttatt 30110991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 13013395 - 13013306
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||| ||||||||| ||||||||||||||||    
T  13013395 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataaacagtcataaatcga 13013306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 533
Target Start/End: Original strand, 29995004 - 29995071
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    |||| ||||||| |||||||||||||||| |||||||||||||| ||   || ||||||||||||||||    
T  29995004 atcgtaaatttatatgtgacataatatataaacagtcataaatc-aattttttttttttaattttaatt 29995071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 6236628 - 6236581
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| ||||| | |||||||||||||||| ||||||||||||||||||    
T  6236628 atcgtaaattcatatgtgacataatatataaacagtcataaatcgaaa 6236581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 507
Target Start/End: Complemental strand, 26449889 - 26449810
Alignment:
Q  428 ggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    ||||| |||||||||||||||||| ||       ||||||||||||| |||||||| ||||||||| |||| | ||||||    
T  26449889 ggagctaggaaatttatggagctcgggcaaaaaatttatcgcaaattcacatgtgagataatatataaacaattataaat 26449810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Original strand, 31002632 - 31002673
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||||||| |||||||||||||||||| || |||||||||||    
T  31002632 cgcaaattcacatgtgacataatatataaatagtcataaatc 31002673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Complemental strand, 37577930 - 37577885
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    ||||||||||||| |||| ||||||||||||| |||| ||||||||    
T  37577930 tttatcgcaaattcacatatgacataatatataaacaatcataaat 37577885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 4325681 - 4325641
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    ||||||||||||||||| ||||||||| || ||||||||||    
T  4325681 cgcaaatttacatgtgatataatatataaatagtcataaat 4325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 17359401 - 17359357
Alignment:
Q  468 gcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| |||||||||||||||||| || | |||||||||||||    
T  17359401 gcaaattcacatgtgacataatatataaataatcataaatcgaaa 17359357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 53692940 - 53692984
Alignment:
Q  468 gcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| ||||| |||||||||||| || |||||||||||||||    
T  53692940 gcaaattcacatgcgacataatatataaatagtcataaatcgaaa 53692984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 17446464 - 17446395
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  17446464 tttatcgcaaattcacatgtgacataatatatcaacagtcataaatcgatacat--ttttttaattttaatt 17446395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 23314071 - 23314023
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314071 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 23314023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 32981148 - 32981196
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32981148 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 32981196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 7434499 - 7434451
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7434499 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 7434451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 11957448 - 11957496
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11957448 gaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 11957496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 15209378 - 15209426
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15209378 gaggttcatcattttgtcaacaaaagtacaatttaaaatagggttatta 15209426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 3830028 - 3829981
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3830028 aggtttataattttgtcaacaaaagtacaatttaaaatagggttatta 3829981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 512
Target Start/End: Original strand, 320668 - 320759
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| |||||||||||||||||||||||| | ||       | ||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  320668 cagtggcggagccaggaaatttatggagcccgggcaaaaattgtatcgcaaattcacatgtgacataatatataatcagtcataaatcgaaa 320759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 17446370 - 17446322
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  17446370 gaggtttatcattttgtcaacaaaagtgcaatttaaaataggattatta 17446322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 41971253 - 41971332
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataa 505  Q
    |||||||||||||||||||||||  |||        ||||||||||||| |||||||||||||||||| |||||||||||    
T  41971253 gcggagccaggaaatttatggagtccagacaaaaaatttatcgcaaattcacatgtgacataatatataaacagtcataa 41971332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 11957345 - 11957390
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  11957345 tttatcgcaaattaacacgtgacataatatatcaacagtcataaat 11957390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 25017656 - 25017611
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  25017656 cgcaaatttacatgtgacataatatataaatagtcataaatcgaaa 25017611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 512
Target Start/End: Original strand, 42309903 - 42309989
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||||||||||||||||||  ||       || |||| ||||| |||||||||||||||||| ||||||||||||| ||||    
T  42309903 gcggagccaggaaatttatggagcttgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaattgaaa 42309989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 35908633 - 35908585
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  35908633 gaggtttatcattttgtcaataaaaatacaatttaaaataggattatta 35908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 170352 - 170404
Alignment:
Q  462 tttatcgcaaatttacatgtgacata--atatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||||||||||||||||  |||||| || |||||||||||||||    
T  170352 tttatcgcaaatttacatgtgacataatatatataaatagtcataaatcgaaa 170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 26272834 - 26272879
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||||||||||||| |||||| || |||||||||||||||    
T  26272834 cgcaaatttacatgtgacatgatatataaatagtcataaatcgaaa 26272879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 42310031 - 42310076
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||    
T  42310031 gtttatcattttgtaaacaaaagtacaatttaaaatatgattatta 42310076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 600
Target Start/End: Complemental strand, 33490441 - 33490409
Alignment:
Q  568 tcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||    
T  33490441 tcaacaaaagtacaatttaaaatagggttatta 33490409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 32981048 - 32981095
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| ||||| |||||||||||||||||| || |||||||||||||||    
T  32981048 atcgtaaattcacatgtgacataatatataaatagtcataaatcgaaa 32981095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Original strand, 40864623 - 40864662
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaa 506  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  40864623 cgcaaatttacatgtgacataatatataaatagtcataaa 40864662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 33490512 - 33490462
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||| ||||||| ||||| |||||||||||| || |||||||||||||||    
T  33490512 tttatagcaaattcacatgcgacataatatataaatagtcataaatcgaaa 33490462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 41971356 - 41971389
Alignment:
Q  563 ttttgtcaacaaaagtacaatttaaaatagggtt 596  Q
    ||||| ||||||||||||||||||||||||||||    
T  41971356 ttttgacaacaaaagtacaatttaaaatagggtt 41971389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 36659332 - 36659262
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36659332 tttatcgaaaattcacatgtgacataatatatcaacggtcataaatcgaaacatt-ttttttaattttaatt 36659262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 3113212 - 3113260
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113212 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 3113260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 34468424 - 34468472
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34468424 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 34468472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 5556538 - 5556491
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5556538 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 5556491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 36631893 - 36631845
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36631893 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 36631845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 33686608 - 33686561
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33686608 aggtttatcattttgtcaacaaaagtacaatttaaaatatggttatta 33686561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 512
Target Start/End: Complemental strand, 36632030 - 36631939
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| |||||||||||||||||||||||| | ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  36632030 cagtggcggagccaggaaatttatggagcccgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcgaaa 36631939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 14775688 - 14775733
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  14775688 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 14775733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 15226141 - 15226186
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  15226141 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 15226186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 7003703 - 7003655
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7003703 gaggtttatcattttgtcaacaaaagtacaatttaaaatatgattatta 7003655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 7049574 - 7049526
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7049574 gaggtttatcattttgtcaacaaaagtacaatttaaaatatgattatta 7049526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 8395201 - 8395153
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8395201 gaggtttatcattttgtcaacaaaagtgcaatttaaaataggtttatta 8395153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 36659237 - 36659189
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  36659237 gaggtttatcattttgtcaataaaagtacaatttaaaataggattatta 36659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 37001329 - 37001377
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  37001329 gaggtttatcattttgtcaataaaagtacaatttaaaataggattatta 37001377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 38637472 - 38637520
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  38637472 gaggtttatcattttgtcaataaaagtacaatttaaaataggattatta 38637520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 8866821 - 8866869
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  8866821 gaggtttatcattttgtcaataaaagtacaatttaaaataagattatta 8866869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 26625821 - 26625773
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  26625821 gaggtttatcattttgtcaataaaagtacaatttcaaataggattatta 26625773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 43183559 - 43183607
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  43183559 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 43183607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 8395335 - 8395288
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  8395335 atcgtaaattcacatgtgacataatatataaacagtcataaatcgaaa 8395288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 508
Target Start/End: Original strand, 11019610 - 11019655
Alignment:
Q  463 ttatcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||    
T  11019610 ttatcacaaattcacatgtgacataatatataaacagtcataaatc 11019655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 567 - 600
Target Start/End: Original strand, 11019694 - 11019727
Alignment:
Q  567 gtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||    
T  11019694 gtcaacaaaagtacaatttaaaatagggttatta 11019727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 25491539 - 25491584
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||    
T  25491539 cgcaaatttacatgtgacataatatataaatagtcataaattgaaa 25491584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 7003788 - 7003727
Alignment:
Q  469 caaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    |||||| |||||||| |||||||||||||| |||||||||||    || ||||||||||||||||    
T  7003788 caaattcacatgtgatataatatatcaacattcataaatcga---ttttttttttaattttaatt 7003727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 7049659 - 7049598
Alignment:
Q  469 caaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    |||||| |||||||| |||||||||||||| |||||||||||    || ||||||||||||||||    
T  7049659 caaattcacatgtgatataatatatcaacattcataaatcga---ttttttttttaattttaatt 7049598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 9557958 - 9557917
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    ||||||||||||||||||||||||||| ||  ||||||||||    
T  9557958 cgcaaatttacatgtgacataatatataaattgtcataaatc 9557917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 9230668 - 9230628
Alignment:
Q  468 gcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  9230668 gcaaattcacatgtgacataatatataaatagtcataaatc 9230628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 18375664 - 18375628
Alignment:
Q  476 acatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||||||||||| || |||||||||||||||    
T  18375664 acatgtgacataatatataaatagtcataaatcgaaa 18375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 600
Target Start/End: Original strand, 8058345 - 8058481
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaattnnnnnnnnnnnnnnnnnngaggtttatc 561  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||                  ||||||||||    
T  8058345 tttatcgcaaattcacatgttacataatatatcaacagtcataaatcgaaatatt-ttttttaattttaattaaaaaattgaaataaaa-gaggtttatc 8058442  T
Q  562 attttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  8058443 attttgtcaacaatagtacaatttaaaataggattatta 8058481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 42443062 - 42443014
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42443062 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 42443014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 771811 - 771763
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  771811 gaggtttatcattttgtcaacaaaaatacaatttaaaatagggttatta 771763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 2286977 - 2286929
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2286977 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 2286929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 16406206 - 16406158
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16406206 gaggtttatcattttgttaacaaaagtacaatttaaaatagggttatta 16406158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 17444125 - 17444173
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17444125 gaggtttatcattttatcaacaaaagtacaatttaaaatagggttatta 17444173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 18982621 - 18982573
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18982621 gaggtttatcattttgtcaacaaaagtacaatttaaaatatggttatta 18982573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 26161824 - 26161871
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26161824 aggtttatcattttgtcaataaaagtacaatttaaaatagggttatta 26161871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 6402896 - 6402941
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  6402896 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 6402941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 31580826 - 31580874
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  31580826 gaggtttatcatttcgtcaacaaaaatacaatttaaaatagggttatta 31580874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 32126282 - 32126326
Alignment:
Q  556 tttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  32126282 tttatcattttgtcaacaaaagtacagtttaaaatagggttatta 32126326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 35963762 - 35963719
Alignment:
Q  557 ttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  35963762 ttatcattttgtcaacaaaagtacaacttaaaatagggttatta 35963719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 522
Target Start/End: Original strand, 26161697 - 26161799
Alignment:
Q  420 ccagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattatt 519  Q
    ||||| |||||||||||||||||||||||| | ||       ||||||||||||| |||||||| ||||||||| |||| | ||||||| ||| ||| ||    
T  26161697 ccagtggcggagccaggaaatttatggagcccgggcaaaaaatttatcgcaaattcacatgtgagataatatataaacaattataaatccaaatattttt 26161796  T
Q  520 ttt 522  Q
    |||    
T  26161797 ttt 26161799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 41250725 - 41250770
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||    
T  41250725 gtttatcattttatcaacaaaagtgcaatttaaaatagggttatta 41250770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 6402768 - 6402857
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  6402768 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 6402857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 45419659 - 45419611
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  45419659 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 45419611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 4554394 - 4554441
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  4554394 aggtttctcattttgtcaacaaaaatacaatttaaaatatggttatta 4554441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 4554336 - 4554386
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| ||||||| |||||||||||||||| || |||||||||||||||    
T  4554336 tttatcgtaaatttagatgtgacataatatataaatagtcataaatcgaaa 4554386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 26238744 - 26238698
Alignment:
Q  466 tcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  26238744 tcgcaaattcacatgcgacataatatataaacagtcataaatcgaaa 26238698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 42443144 - 42443086
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattatttttt 523  Q
    |||| ||||| |||||||| ||||||||| |||||||||||||||||| ||| ||||||    
T  42443144 atcgtaaattcacatgtgatataatatataaacagtcataaatcgaaatattttttttt 42443086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 45122269 - 45122219
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||| ||||    
T  45122269 tttatcgcaaattcacatgtgatataatatataaacagtcataaattgaaa 45122219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 17035753 - 17035802
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaa 511  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  17035753 tttatcgtaaattcacatatgacataatatatcaatagtcataaatcgaa 17035802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 17090264 - 17090313
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaa 511  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  17090264 tttatcgtaaattcacatatgacataatatatcaatagtcataaatcgaa 17090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 17444031 - 17444076
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  17444031 atcgtaaattcacatgtgacataatatataaacagtcataaatcga 17444076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 31393062 - 31393021
Alignment:
Q  470 aaatttacatgtgacataatatatcaacagtcataaatcgaa 511  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  31393062 aaatttacatgtgacataatatataaatagtcataaatcgaa 31393021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 26238684 - 26238644
Alignment:
Q  560 tcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  26238684 tcatttcgtcaagaaaagtacaatttaaaatagggttatta 26238644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 505
Target Start/End: Original strand, 7071563 - 7071606
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataa 505  Q
    ||||||||||||| ||||||||||||||| || |||||||||||    
T  7071563 tttatcgcaaattcacatgtgacataatacataaacagtcataa 7071606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 591
Target Start/End: Original strand, 26656305 - 26656336
Alignment:
Q  560 tcattttgtcaacaaaagtacaatttaaaata 591  Q
    ||||||||||||||||||||||||||||||||    
T  26656305 tcattttgtcaacaaaagtacaatttaaaata 26656336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 34907911 - 34907880
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatat 493  Q
    ||||||||||||||||||||||||||||||||    
T  34907911 tttatcgcaaatttacatgtgacataatatat 34907880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 12755946 - 12755984
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaat 590  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  12755946 gaggtttatcattttgtcaataaaactacaatttaaaat 12755984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 507
Target Start/End: Original strand, 41250632 - 41250674
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    |||| ||||| |||||||||||||||||| |||||||||||||    
T  41250632 atcgtaaattcacatgtgacataatatataaacagtcataaat 41250674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 19951737 - 19951782
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||| |||||| ||||||||||| || |||||||||||||||    
T  19951737 cgcaaattcacatgtaacataatatataaatagtcataaatcgaaa 19951782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 421 - 511
Target Start/End: Complemental strand, 27047019 - 27046929
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaa 511  Q
    |||| ||||||||||||||| |||||||| | ||       |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27047019 cagtggcggagccaggaaatatatggagcccgggcaaaaaatttatcgcaaatttacatgtgacataatatataaacagtcataaatcgaa 27046929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 3647881 - 3647929
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3647881 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 3647929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 27046889 - 27046840
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattag 601  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27046889 gaggtttatcattttgtcaacagaagtacaatttaaaatagggttattag 27046840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 29727477 - 29727522
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29727477 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 29727522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 7279199 - 7279129
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaattttaatt 533  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||    
T  7279199 tttatcgcaaattcacatgcgacataatatatcaacaatcataaattgaaac-tttttttttaattttaatt 7279129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 42231982 - 42231935
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42231982 aggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 42231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 3436368 - 3436318
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  3436368 tttatcgcaaattcacatgtgacataatatataaacagtcataaatcgaaa 3436318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 508
Target Start/End: Complemental strand, 23403275 - 23403188
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||| |||||||||||||||||||||||||| ||       ||| || |||||| ||||||||||||||||||||| |||||||||||    
T  23403275 cagtggcggagccaggaaatttatggagctcgggcgaaatttttttcccaaattcacatgtgacataatatatcaatagtcataaatc 23403188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 24019483 - 24019528
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  24019483 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 24019528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 28524273 - 28524228
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  28524273 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 28524228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 552 - 593
Target Start/End: Complemental strand, 36409561 - 36409520
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36409561 gaggtttatcattttgtcaacaaaagtacaatttaaaatagg 36409520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 39915589 - 39915544
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  39915589 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 39915544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 3436303 - 3436263
Alignment:
Q  560 tcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3436303 tcattttgtcaacaaaagtacaatttaaaatagggttatta 3436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 15839354 - 15839306
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  15839354 gaggtttatcattttgtcaacaaaagtgcaatttaaaataggattatta 15839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 560 - 600
Target Start/End: Original strand, 40469965 - 40470005
Alignment:
Q  560 tcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40469965 tcattttgtcaacaaaagtacaatttaaaatagggttatta 40470005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 23403144 - 23403097
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23403144 aggtttatcattttgtcaataaaagtacaatttaaaataggattatta 23403097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 29632459 - 29632416
Alignment:
Q  557 ttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  29632459 ttatcattttatcaacaaaagtacaatttaaaatagggttatta 29632416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 42447196 - 42447149
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  42447196 atcgcaaattcacatgtgacataatatataaacagtcataaatcgaaa 42447149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 34135898 - 34135943
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34135898 gtttatcattttgtcaataaaagtacaatttaaaataggattatta 34135943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 4405085 - 4405037
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  4405085 gaggtttatcattttgtcaataaaagtacaatttaaaataagattatta 4405037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 16787115 - 16787163
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  16787115 gaggtttatcaatttgtcaataaaagtacaatttaaaataggcttatta 16787163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 28524401 - 28524312
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  28524401 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 28524312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 510
Target Start/End: Original strand, 29727349 - 29727434
Alignment:
Q  425 agcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    ||||||||||||||||||||||||  | ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  29727349 agcggagccaggaaatttatggagtccgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 29727434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 7279099 - 7279055
Alignment:
Q  556 tttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||    
T  7279099 tttatcatttagtcaacaaaagtacaatttaaaataagattatta 7279055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 29632591 - 29632502
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||| ||||||||| ||||||||||||||||    
T  29632591 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataaacagtcataaatcga 29632502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 40469901 - 40469951
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| ||||| ||||| || ||||||||| ||||||||||||||||||    
T  40469901 tttatcgtaaattcacatgcgatataatatataaacagtcataaatcgaaa 40469951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 40145915 - 40145960
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||| |||||||||||||||| || | |||||||||||||    
T  40145915 cgcaaatttatatgtgacataatatataaataatcataaatcgaaa 40145960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 29744347 - 29744299
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29744347 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 29744299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 34947916 - 34947964
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34947916 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 34947964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 33228444 - 33228489
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33228444 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 33228489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 399692 - 399647
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  399692 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 399647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 13838872 - 13838828
Alignment:
Q  556 tttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  13838872 tttatcattttatcaacaaaaatacaatttaaaatagggttatta 13838828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 509
Target Start/End: Complemental strand, 399819 - 399731
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcg 509  Q
    |||| |||||||||||||||||||||||||  ||       || |||| ||||| |||||||| ||||||||| |||||||||||||||    
T  399819 cagtggcggagccaggaaatttatggagcttgggcgaaaaattaatcgtaaattcacatgtgatataatatataaacagtcataaatcg 399731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 28997806 - 28997758
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||||    
T  28997806 gaggtttatcattttgtcaataaaactataatttaaaataggattatta 28997758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 562 - 600
Target Start/End: Original strand, 31028054 - 31028092
Alignment:
Q  562 attttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||| || |||||    
T  31028054 attttgtcaacaaaagtacaatttaaaatatggctatta 31028092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 11971229 - 11971188
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||||||| |||||||||||||||||| || |||||||||||    
T  11971229 cgcaaattcacatgtgacataatatataaatagtcataaatc 11971188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 32441880 - 32441924
Alignment:
Q  468 gcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| ||||| |||||||||||| || |||||||||||||||    
T  32441880 gcaaattcacatgcgacataatatataaatagtcataaatcgaaa 32441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 10036984 - 10036936
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036984 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 10036936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 13819054 - 13819006
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13819054 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 13819006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 16155968 - 16155920
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155968 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 16155920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 16332990 - 16333038
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16332990 gaggtttatcattttgtcaacaaaattacaatttaaaatagggttatta 16333038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 36292710 - 36292758
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36292710 gaggtttatcattttatcaacaaaagtacaatttaaaatagggttatta 36292758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 39435777 - 39435729
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39435777 gaggtttatcattttatcaacaaaagtacaatttaaaatagggttatta 39435729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 39656617 - 39656665
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39656617 gaggtttatcattttgtcaacaaaaatacaatttaaaatagggttatta 39656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 43069923 - 43069875
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43069923 gaggtttatcatttagtcaacaaaagtacaatttaaaatagggttatta 43069875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 26282410 - 26282455
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  26282410 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 26282455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 523
Target Start/End: Complemental strand, 13819174 - 13819077
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattatttttt 523  Q
    |||||| ||||||||||||||||| | ||       || |||| ||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  13819174 gcggagtcaggaaatttatggagcccgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcgaaatattttttttt 13819077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 17331086 - 17331134
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  17331086 gaggtttatcattttgtcaataaaagtacaatttaaaataggattatta 17331134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 19986521 - 19986473
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19986521 gaggtttatcattttgtcaacaaacgtacaatttaaaataggattatta 19986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 36292433 - 36292385
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  36292433 gaggtttatcattttatcaacaaaagtacaatttaaaataaggttatta 36292385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 552 - 599
Target Start/End: Original strand, 1775468 - 1775515
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatt 599  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  1775468 gaggtttatcattttgtcaacaaaagtgcaatttaaaatatggttatt 1775515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 31500716 - 31500763
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatcg 509  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31500716 tttatcgcaaattcacatgtgacatagtatatcaacagtcataaatcg 31500763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 39656488 - 39656591
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaa 525  Q
    |||||||||| ||||||||||||||| ||       || |||  ||||| |||||||| ||||||||| |||||||||||||||||| ||| |||||||     
T  39656488 gcggagccagaaaatttatggagctcgggcaaaaaattaatcttaaattcacatgtgatataatatataaacagtcataaatcgaaatatttttttttat 39656587  T
Q  526 tttt 529  Q
    ||||    
T  39656588 tttt 39656591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 36292572 - 36292662
Alignment:
Q  420 ccagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    ||||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  36292572 ccagtggcggagccaggaaatttatggagccggggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 36292662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 1775337 - 1775422
Alignment:
Q  427 cggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||||||||||||||||||| | |        || |||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  1775337 cggagccaggaaatttatggagcccggacaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcgaaa 1775422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 12277945 - 12277993
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  12277945 gaggattatcattttgtcaataaaagtacaatttaaaataggattatta 12277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 26282281 - 26282370
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  26282281 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 26282370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 28801944 - 28801908
Alignment:
Q  560 tcattttgtcaacaaaagtacaatttaaaatagggtt 596  Q
    |||||||||||||||||||||||||||||||||||||    
T  28801944 tcattttgtcaacaaaagtacaatttaaaatagggtt 28801908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 37255709 - 37255661
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  37255709 gaggtttatcattttgtcaataaaaatacaatttaaaataggattatta 37255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 1280851 - 1280806
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||| |||||||||||||||||| || |||||||||||||||    
T  1280851 cgcaaattcacatgtgacataatatataaatagtcataaatcgaaa 1280806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 31681443 - 31681395
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||||    
T  31681443 gaggtttatcattttgtcaataaaactataatttaaaataggattatta 31681395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 33431397 - 33431349
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||||    
T  33431397 gaggtttatcattttgtcaataaaactataatttaaaataggattatta 33431349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 28802005 - 28801958
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| ||||    
T  28802005 atcgcaaattcacatgcgacataatatataaacagtcataaattgaaa 28801958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 508
Target Start/End: Complemental strand, 192904 - 192858
Alignment:
Q  462 tttatcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||||||    
T  192904 tttatcgcaaattcacatgtaacataatatataaacaatcataaatc 192858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 591
Target Start/End: Complemental strand, 1280790 - 1280761
Alignment:
Q  562 attttgtcaacaaaagtacaatttaaaata 591  Q
    ||||||||||||||||||||||||||||||    
T  1280790 attttgtcaacaaaagtacaatttaaaata 1280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 16156066 - 16156001
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttttaatttta 530  Q
    |||| ||||| |||||||||||||||||| |||| ||| ||||||||| |||  |||||| |||||    
T  16156066 atcgtaaattcacatgtgacataatatataaacaatcacaaatcgaaatatttatttttattttta 16156001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 19986600 - 19986552
Alignment:
Q  481 tgacataatatatcaacagtcataaatcgaaacattattttttaatttt 529  Q
    ||||||||||||| |||||||||||||||||| ||| | |||| |||||    
T  19986600 tgacataatatataaacagtcataaatcgaaatattttatttttatttt 19986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 27168709 - 27168753
Alignment:
Q  468 gcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    ||||||| |||| ||||||||||||| || |||||||||||||||    
T  27168709 gcaaattcacatttgacataatatataaatagtcataaatcgaaa 27168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 34083211 - 34083259
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34083211 gaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttatta 34083259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 27936227 - 27936180
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27936227 aggtttatcattttgtcaacaaaagtaaaatttaaaatagggttatta 27936180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 40080832 - 40080879
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40080832 aggtttatcattttgtcaacaaaagtacaatttaaaataaggttatta 40080879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 6268514 - 6268559
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  6268514 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 6268559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 22967536 - 22967581
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  22967536 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 22967581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 35515072 - 35515025
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  35515072 aggtttatcattttatcaacaaaaatacaatttaaaatagggttatta 35515025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 552 - 593
Target Start/End: Complemental strand, 19391223 - 19391182
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagg 593  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  19391223 gaggtttatcattttatcaacaaaagtacaatttaaaatagg 19391182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 39772865 - 39772820
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  39772865 gtttatcattttatcaacaaaaggacaatttaaaatagggttatta 39772820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 45336924 - 45336887
Alignment:
Q  563 ttttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45336924 ttttgtcaacaaaagtacaatttaaaatagggttatta 45336887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 6929984 - 6930032
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  6929984 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 6930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 11017360 - 11017408
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  11017360 gaggtttatcaatttgtcaataaaagtacaatttaaaataggattatta 11017408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 45184057 - 45184009
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  45184057 gaggtttatcattttgtcaataaaactacaatttaaaataggattatta 45184009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 522
Target Start/End: Complemental strand, 27936346 - 27936252
Alignment:
Q  428 ggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaacattattttt 522  Q
    ||||| ||||||||||||||| || ||       ||||||||||||| |||||||| ||||||||| |||| ||||||||| |||  ||||||||    
T  27936346 ggagcaaggaaatttatggagttcgggcaaaaaatttatcgcaaattcacatgtgagataatatataaacaatcataaatccaaattttattttt 27936252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 43137396 - 43137351
Alignment:
Q  467 cgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||||| |||||||||||||||||| || |||||||||||||||    
T  43137396 cgcaaattcacatgtgacataatatatgaatagtcataaatcgaaa 43137351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 19564610 - 19564654
Alignment:
Q  556 tttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||    
T  19564610 tttatcattttgtcatcaaaagtacaatgtaaaatatggttatta 19564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 508
Target Start/End: Original strand, 1185542 - 1185589
Alignment:
Q  462 tttatcgcaaattt-acatgtgacataatatatcaacagtcataaatc 508  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  1185542 tttatcgtaaatttcacatgtgacataatatataaacagtcataaatc 1185589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 508
Target Start/End: Original strand, 34083119 - 34083162
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatc 508  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||    
T  34083119 atcgtaaattcacatgtgacataatatataaacagtcataaatc 34083162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 562 - 600
Target Start/End: Original strand, 1185609 - 1185647
Alignment:
Q  562 attttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  1185609 attttgtcaacaaaagtgaaatttaaaatagggttatta 1185647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 39772951 - 39772906
Alignment:
Q  465 atcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||| |||||||||||||||||| |||| |||||||||||    
T  39772951 atcgtaaattcacatgtgacataatatataaacaatcataaatcga 39772906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 5136358 - 5136322
Alignment:
Q  564 tttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  5136358 tttgtcaacaaaaatacaatttaaaataggattatta 5136322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 507
Target Start/End: Complemental strand, 5136424 - 5136380
Alignment:
Q  463 ttatcgcaaatttacatgtgacataatatatcaacagtcataaat 507  Q
    |||| ||||||| ||||||||| |||||||| |||||||||||||    
T  5136424 ttattgcaaattcacatgtgacgtaatatataaacagtcataaat 5136380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 19564480 - 19564562
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||||| ||||||||||||||||||| ||       |||||||||| || | |||||||  ||||||| ||||||||||||||||    
T  19564480 gcggagtcaggaaatttatggagctcgggcgaaaaatttatcgcaacttcaaatgtgac--aatatataaacagtcataaatcga 19564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 32291 - 32244
Alignment:
Q  553 aggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32291 aggtttatcattttgtcaacaaaaatacaatttaaaatagggttatta 32244  T

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Target: scaffold0154; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 32390 - 32298
Alignment:
Q  419 accagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcgaaa 512  Q
    |||||| |||||||||||||||||||||||| | ||       ||||||||||||| || | ||||||||||||| |||| |||||||||||||    
T  32390 accagtggcggagccaggaaatttatggagccc-gggtaaaaatttatcgcaaattcacttatgacataatatataaacaatcataaatcgaaa 32298  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 479549 - 479594
Alignment:
Q  555 gtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  479549 gtttatcattttatcaacaaaagtacaatttaaaatagggttatta 479594  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 509
Target Start/End: Original strand, 479418 - 479506
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcg 509  Q
    |||| ||||||||||||||||||||||||   ||       || |||| ||||| |||||||| ||||||||| |||||||||||||||    
T  479418 cagtggcggagccaggaaatttatggagcctgggcgaaaaattaatcgtaaattcacatgtgatataatatataaacagtcataaatcg 479506  T

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Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 18636 - 18588
Alignment:
Q  552 gaggtttatcattttgtcaacaaaagtacaatttaaaatagggttatta 600  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  18636 gaggtttatcattttatcaacaaaagtacaatttaatatagggttatta 18588  T

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Target: scaffold0069; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 18773 - 18684
Alignment:
Q  421 cagtagcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataatatatcaacagtcataaatcga 510  Q
    |||| ||||||||| |||||||||||||| | ||       || |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  18773 cagtggcggagccatgaaatttatggagcccgggcaaaaaattaatcgtaaattcacatgtgacataatatataaacagtcataaatcga 18684  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 21949 - 22011
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataa 488  Q
    |||||||||||||||||||||||| ||||       ||||||||||||| |||||||||||||    
T  21949 gcggagccaggaaatttatggagcccaggcaaaaaatttatcgcaaattcacatgtgacataa 22011  T

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Target: scaffold0178; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 27451 - 27513
Alignment:
Q  426 gcggagccaggaaatttatggagctcaggnnnnnnntttatcgcaaatttacatgtgacataa 488  Q
    |||||||||||||||||||||||| ||||       ||||||||||||| |||||||||||||    
T  27451 gcggagccaggaaatttatggagcccaggcaaaaaatttatcgcaaattcacatgtgacataa 27513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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