View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9355-LTR4-TNT-insertion-2 (Length: 209)
Name: F9355-LTR4-TNT-insertion-2
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 41872122 - 41871930
Alignment:
| Q |
9 |
aataaagacatatgcatgtatttaattaagctctctccatgctgtaataattagctagctacttaccgaatggatattactctctttattttgtggtttt |
108 |
Q |
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| T |
41872122 |
aataaagacatatgcatgtatttaattaagctctctccatgctgtaataattagctagctacttaccgaatggatattactctctttattttgtggtttt |
41872023 |
T |
|
| Q |
109 |
aattatgaacttacatgtgtgttcttattgaagcatctgaatcgttgaaaatacattaatttttaaaaagatgttctgatgattcgcaattgg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41872022 |
aattatgaacttacatgtgtgttcttattgaagcatctgaatcgttgaaaatacattaatttttaaaaagatgttctgatgattcgcaattgg |
41871930 |
T |
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