View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9355-LTR4-TNT-insertion-3 (Length: 730)

Name: F9355-LTR4-TNT-insertion-3
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9355-LTR4-TNT-insertion-3
F9355-LTR4-TNT-insertion-3
[»] chr7 (28 HSPs)
chr7 (11-720)||(45271771-45272480)
chr7 (15-541)||(45275308-45275841)
chr7 (15-196)||(45283549-45283730)
chr7 (11-200)||(45294933-45295122)
chr7 (11-200)||(45303893-45304082)
chr7 (223-363)||(45283814-45283955)
chr7 (223-363)||(45295193-45295333)
chr7 (223-363)||(45304153-45304293)
chr7 (669-720)||(45276096-45276147)
chr7 (670-720)||(45284018-45284068)
chr7 (669-719)||(45295392-45295442)
chr7 (669-719)||(45304352-45304402)
chr7 (578-634)||(32513175-32513231)
chr7 (576-640)||(34000255-34000319)
chr7 (559-642)||(35165524-35165608)
chr7 (590-640)||(8227342-8227392)
chr7 (586-640)||(38911292-38911346)
chr7 (552-640)||(12212267-12212355)
chr7 (553-640)||(19793797-19793886)
chr7 (558-633)||(10236890-10236966)
chr7 (553-640)||(32228432-32228520)
chr7 (587-639)||(37451252-37451304)
chr7 (595-638)||(46551869-46551912)
chr7 (564-617)||(21096102-21096156)
chr7 (578-640)||(27544950-27545012)
chr7 (558-639)||(38553812-38553894)
chr7 (576-614)||(42227809-42227847)
chr7 (587-640)||(1399155-1399208)
[»] chr8 (10 HSPs)
chr8 (386-554)||(7241266-7241434)
chr8 (553-638)||(42208449-42208535)
chr8 (558-630)||(38489187-38489260)
chr8 (553-640)||(7553672-7553760)
chr8 (553-623)||(9070968-9071039)
chr8 (553-635)||(16843503-16843586)
chr8 (578-635)||(36919309-36919366)
chr8 (576-632)||(13284269-13284325)
chr8 (587-634)||(19701359-19701406)
chr8 (593-642)||(10967203-10967252)
[»] chr6 (19 HSPs)
chr6 (553-636)||(9333960-9334044)
chr6 (558-640)||(15291675-15291758)
chr6 (553-627)||(8831213-8831287)
chr6 (576-633)||(15169931-15169988)
chr6 (576-633)||(15178703-15178760)
chr6 (576-633)||(24623321-24623378)
chr6 (552-610)||(4826313-4826372)
chr6 (558-640)||(8569702-8569785)
chr6 (585-640)||(31140825-31140880)
chr6 (590-633)||(33608337-33608380)
chr6 (576-642)||(2105896-2105962)
chr6 (587-641)||(9987073-9987127)
chr6 (581-639)||(10320440-10320498)
chr6 (576-638)||(15187058-15187120)
chr6 (576-638)||(15473486-15473548)
chr6 (583-633)||(28757035-28757085)
chr6 (578-639)||(884075-884136)
chr6 (579-640)||(6470623-6470684)
chr6 (553-633)||(9923240-9923321)
[»] chr1 (16 HSPs)
chr1 (558-640)||(6000128-6000211)
chr1 (553-640)||(9639797-9639885)
chr1 (558-642)||(17669636-17669721)
chr1 (579-640)||(24124837-24124898)
chr1 (553-633)||(33153860-33153941)
chr1 (587-635)||(33577927-33577975)
chr1 (558-640)||(2817358-2817441)
chr1 (558-640)||(30678798-30678881)
chr1 (605-640)||(39096873-39096908)
chr1 (558-640)||(47528432-47528515)
chr1 (576-634)||(3777717-3777775)
chr1 (586-632)||(13261172-13261218)
chr1 (553-634)||(22021418-22021500)
chr1 (584-630)||(30937626-30937672)
chr1 (558-634)||(16967179-16967256)
chr1 (578-639)||(17221526-17221587)
[»] chr5 (15 HSPs)
chr5 (558-639)||(42964503-42964585)
chr5 (576-640)||(40445976-40446040)
chr5 (552-640)||(9123824-9123913)
chr5 (558-634)||(23118036-23118113)
chr5 (587-639)||(4432110-4432162)
chr5 (588-640)||(18147571-18147623)
chr5 (584-640)||(34206220-34206276)
chr5 (576-639)||(8882403-8882466)
chr5 (553-611)||(21657378-21657437)
chr5 (576-627)||(29695021-29695072)
chr5 (576-622)||(3052290-3052336)
chr5 (551-640)||(32565517-32565607)
chr5 (587-636)||(8639344-8639393)
chr5 (576-633)||(16076431-16076488)
chr5 (587-636)||(21316879-21316928)
[»] chr4 (20 HSPs)
chr4 (574-627)||(39842014-39842067)
chr4 (576-627)||(56096210-56096261)
chr4 (558-623)||(46434745-46434811)
chr4 (559-639)||(16733505-16733586)
chr4 (553-636)||(11166683-11166767)
chr4 (586-634)||(30380529-30380577)
chr4 (576-640)||(43722758-43722822)
chr4 (558-640)||(7230273-7230356)
chr4 (589-640)||(9392926-9392977)
chr4 (586-633)||(27951408-27951455)
chr4 (558-640)||(51298681-51298764)
chr4 (564-641)||(7371539-7371617)
chr4 (576-630)||(12263255-12263309)
chr4 (553-642)||(19908683-19908773)
chr4 (586-640)||(21465604-21465658)
chr4 (579-633)||(34595943-34595997)
chr4 (553-641)||(10336966-10337055)
chr4 (594-639)||(18635524-18635569)
chr4 (553-633)||(47704582-47704663)
chr4 (576-633)||(52936641-52936698)
[»] chr3 (14 HSPs)
chr3 (576-640)||(2563922-2563986)
chr3 (558-640)||(27397597-27397680)
chr3 (584-627)||(53221964-53222007)
chr3 (558-640)||(55125999-55126082)
chr3 (590-640)||(22462305-22462355)
chr3 (587-640)||(7827501-7827554)
chr3 (587-640)||(7829889-7829942)
chr3 (576-640)||(5349521-5349585)
chr3 (586-640)||(38898223-38898277)
chr3 (578-636)||(47039424-47039482)
chr3 (576-634)||(47377353-47377411)
chr3 (576-641)||(2584012-2584077)
chr3 (587-644)||(27199437-27199493)
chr3 (585-634)||(31085007-31085056)
[»] chr2 (15 HSPs)
chr2 (553-640)||(24393238-24393326)
chr2 (558-640)||(12124538-12124621)
chr2 (578-641)||(12893250-12893313)
chr2 (576-634)||(40967375-40967433)
chr2 (558-638)||(19512850-19512931)
chr2 (558-639)||(39761432-39761513)
chr2 (587-639)||(6723092-6723144)
chr2 (587-642)||(16204832-16204887)
chr2 (558-640)||(37320502-37320585)
chr2 (576-639)||(42181307-42181370)
chr2 (587-640)||(9389461-9389514)
chr2 (553-633)||(12413493-12413574)
chr2 (553-633)||(12425553-12425634)
chr2 (558-634)||(21497666-21497743)
chr2 (551-635)||(22441175-22441260)
[»] scaffold1327 (1 HSPs)
scaffold1327 (587-640)||(549-602)


Alignment Details
Target: chr7 (Bit Score: 661; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 11 - 720
Target Start/End: Original strand, 45271771 - 45272480
Alignment:
Q  11 ccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45271771 ccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtctt 45271870  T
Q  111 caccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttcannnnnnnnac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  45271871 caccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttcattttttttac 45271970  T
Q  211 gcttataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattcta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  45271971 gcttataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcaaaaaaagtttcaaccaaccaaagtaaattcta 45272070  T
Q  311 tatttggcaattttttagatgataggtacgtaatagtcgtaaacttctcggttgaaacactatctaccactattacagttaacattgtgatgagtagaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45272071 tatttggcaattttttagatgataggtacgtaatagtcgtaaacttctcggttgaaacactatctaccactattacagttaacattgtgatgagtagaaa 45272170  T
Q  411 caattctcattattgaaatcaatgtgctaagtgaattacaaagtggtatttcatcaaatatatactcagcgaagtccctaaaacaggataaactaattct 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45272171 caattctcattattgaaatcaatgtgctaagtgaattacaaagtggtatttcatcaaatatatactcagcgaagtccctaaaacaggataaactaattct 45272270  T
Q  511 gttatatacaattattatttgaccgttactaactaacttctattttatttttgtggtgtccgaggttgaacctcgaaccttacatatatcatacattgtc 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45272271 gttatatacaattattatttgaccgttactaactaacttctattttatttctgtggtgtccgaggttgaacctcgaaccttacatatatcatacattgtc 45272370  T
Q  611 cttatcagctgagttaaactcacggggacactaactaacttctattaaattggacaaggtttgttgtgatgttttgcaagaaaataacatttctataata 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45272371 cttatcagctgagttaaactcacggggacactaactaacttctattaaattggacaaggtttgttgtgatgttttgcaagaaaataacatttctataata 45272470  T
Q  711 atgttaatta 720  Q
    ||||||||||    
T  45272471 atgttaatta 45272480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 541
Target Start/End: Original strand, 45275308 - 45275841
Alignment:
Q  15 gcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtcttcacc 114  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  45275308 gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc 45275407  T
Q  115 atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttcannnnnnnnacgctt 214  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||        | ||||    
T  45275408 atttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacggcggagataattacctttcccttca-tttttttaggctt 45275506  T
Q  215 ataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatt 314  Q
    || |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||       ||||||||||||||||||||||||||||||    
T  45275507 attggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatt 45275606  T
Q  315 tggcaattttttagatgataggtacgtaatagtcgtaaacttctc-----------------ggttgaaacactatctaccactattacagttaacattg 397  Q
    |||||||||||||||||||||| || |||||||||||||||||||                  ||||||||||||||||||||||||||         ||    
T  45275607 tggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactattac---------tg 45275697  T
Q  398 tgatgagtagaaacaattctcattattgaaatcaatgtgctaagtgaattacaaagtggtatttcatcaaatatatactcagcgaagtccctaaaacagg 497  Q
    | ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  45275698 ttatgagtagaaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggtacttcatcaaatatatactcagtgaagtccctaaaacagg 45275797  T
Q  498 ataaactaattctgttatatacaattattatttgaccgttacta 541  Q
    |  |||||||||||||||||||| |||||||||||| |||||||    
T  45275798 aataactaattctgttatatacagttattatttgacagttacta 45275841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 45283549 - 45283730
Alignment:
Q  15 gcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtcttcacc 114  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  45283549 gcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgttgagtttgaacctcggggtcttcacc 45283648  T
Q  115 atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttccc 196  Q
    ||||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45283649 atttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctttccc 45283730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 45294933 - 45295122
Alignment:
Q  11 ccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtctt 110  Q
    ||||||||||||||||| || ||||| |||||||| ||||| | ||| ||||||||||||| |  ||||  |||||||||||||| ||||| ||||||||    
T  45294933 ccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcagggtctt 45295032  T
Q  111 caccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttca 200  Q
    ||||||||||| |||   ||  ||| || ||||||  ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  45295033 caccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctttccattca 45295122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 45303893 - 45304082
Alignment:
Q  11 ccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtctt 110  Q
    ||||||||||||||||| || ||||| |||||||| ||||| | ||| ||||||||||||| |  ||||  |||||||||||||| ||||| ||||||||    
T  45303893 ccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcagggtctt 45303992  T
Q  111 caccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttca 200  Q
    ||||||||||| |||   ||  ||| || ||||||  ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  45303993 caccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctttccattca 45304082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 45283814 - 45283955
Alignment:
Q  223 ttattggagatccttgcagagttatgggatgatggtatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggca-at 321  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||       |||| |||||||||||||||||||||||| |||||  |    
T  45283814 ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt 45283913  T
Q  322 tttttagatgataggtacgtaatagtcgtaaacttctcggtt 363  Q
    ||||||||||||||| || |||| ||||||||||||||||||    
T  45283914 tttttagatgataggcacataattgtcgtaaacttctcggtt 45283955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 45295193 - 45295333
Alignment:
Q  223 ttattggagatccttgcagagttatgggatgatggtatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggcaatt 322  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||| ||        ||||| ||||||||||||||||||||||||||||||||    
T  45295193 ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt 45295292  T
Q  323 ttttagatgataggtacgtaatagtcgtaaacttctcggtt 363  Q
    | ||| |||||||| || |||| |||| |||||| ||||||    
T  45295293 tgttaaatgataggcacataattgtcgaaaacttatcggtt 45295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 45304153 - 45304293
Alignment:
Q  223 ttattggagatccttgcagagttatgggatgatggtatggtttttataggttatcnnnnnnngtttcaaccaaccaaagtaaattctatatttggcaatt 322  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||| ||        ||||| ||||||||||||||||||||||||||||||||    
T  45304153 ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt 45304252  T
Q  323 ttttagatgataggtacgtaatagtcgtaaacttctcggtt 363  Q
    | ||| |||||||| || |||| |||| |||||| ||||||    
T  45304253 tgttaaatgataggcacataattgtcgaaaacttatcggtt 45304293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 669 - 720
Target Start/End: Original strand, 45276096 - 45276147
Alignment:
Q  669 gtttgttgtgatgttttgcaagaaaataacatttctataataatgttaatta 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276096 gtttgttgtgatgttttgcaagaaaataacatttctataataatgttaatta 45276147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 670 - 720
Target Start/End: Original strand, 45284018 - 45284068
Alignment:
Q  670 tttgttgtgatgttttgcaagaaaataacatttctataataatgttaatta 720  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  45284018 tttgttgtgatgttttgcaagaaaacagcatttctataataatgttaatta 45284068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 719
Target Start/End: Original strand, 45295392 - 45295442
Alignment:
Q  669 gtttgttgtgatgttttgcaagaaaataacatttctataataatgttaatt 719  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  45295392 gtttgttgtgatgttttgcaagaaaacagcatttctataataatgttaatt 45295442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 719
Target Start/End: Original strand, 45304352 - 45304402
Alignment:
Q  669 gtttgttgtgatgttttgcaagaaaataacatttctataataatgttaatt 719  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  45304352 gtttgttgtgatgttttgcaagaaaacagcatttctataataatgttaatt 45304402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 634
Target Start/End: Original strand, 32513175 - 32513231
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    |||||||||||||| ||||||| ||||||||| |||| |||||||||||| ||||||    
T  32513175 gaacctcgaaccttgcatatattatacattgtacttaccagctgagttaagctcacg 32513231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 34000319 - 34000255
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||| |||||||||||||||| || |||| ||||||||| ||||||||| ||||||| ||||    
T  34000319 ttgaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctcacggagaca 34000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 642
Target Start/End: Complemental strand, 35165608 - 35165524
Alignment:
Q  559 ttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    ||||||||| | ||||||| |||||||  ||||||||||||| ||  |||||| |||||| ||||||||||||||||| ||||||    
T  35165608 ttttgtggtattcgaggttcgaacctcagaccttacatatattatgtattgtcgttatcaactgagttaaactcacggagacact 35165524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 640
Target Start/End: Complemental strand, 8227392 - 8227342
Alignment:
Q  590 ttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||| || |||||||||||||| ||||| ||||||||||||||||    
T  8227392 ttacatatattatgcattgtccttatcaactgagctaaactcacggggaca 8227342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 640
Target Start/End: Complemental strand, 38911346 - 38911292
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||| ||||||| |||||||||| |||||| ||||||||| ||||||||||||    
T  38911346 aaccttgcatatattatacattgtctttatcaactgagttaagctcacggggaca 38911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 640
Target Start/End: Complemental strand, 12212355 - 12212267
Alignment:
Q  552 attttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||| |||||||||||||||||||| ||||| |  ||||| ||||||| |||||| ||||||| || |||| ||||||| |||||||||    
T  12212355 attttttttttgtggtgtccgaggttcgaacc-ctgaccttgcatatattatacatcgtccttaccaactgaattaaacttacggggaca 12212267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 640
Target Start/End: Complemental strand, 19793886 - 19793797
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatat-atcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||||||| ||||| |||||||||||||||| |||||    
T  19793886 ttttttttttatggtggccgaggttcgaaccccgaatcttgcatattatcatgcattgtccatatcaactgagttaaactcacgaggaca 19793797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 633
Target Start/End: Original strand, 10236890 - 10236966
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| |||||||||| |||| |||||||||||||| |||| || || |||||| |||| || |||||||||||||||    
T  10236890 ttttggtggtgtccggggttcgaacctcgaaccttgcatacattatgcattgttcttaccaactgagttaaactcac 10236966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 640
Target Start/End: Complemental strand, 32228520 - 32228432
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| ||||||||||| ||||| || |||||||  ||||||||||||| || | |||||| || |||||||||||| |||||| |||||    
T  32228520 ttttttttttgtggtggccgagatttgaacctcagaccttacatatattatgctttgtccataccagctgagttaagctcacgaggaca 32228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 639
Target Start/End: Original strand, 37451252 - 37451304
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||||||||||| || |||| ||||||||| ||||| |||||||||||||||    
T  37451252 accttacatatattatgcattatccttatcaactgagctaaactcacggggac 37451304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 638
Target Start/End: Original strand, 46551869 - 46551912
Alignment:
Q  595 tatatcatacattgtccttatcagctgagttaaactcacgggga 638  Q
    ||||| || |||||||||||||| ||||||||||||||||||||    
T  46551869 tatattatgcattgtccttatcaactgagttaaactcacgggga 46551912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 617
Target Start/End: Complemental strand, 21096156 - 21096102
Alignment:
Q  564 tggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatca 617  Q
    |||||||||||||| ||||||| |||||| |||||||| | ||||||||||||||    
T  21096156 tggtgtccgaggttcgaacctcaaaccttgcatatatccttcattgtccttatca 21096102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 640
Target Start/End: Complemental strand, 27545012 - 27544950
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||| || ||||| ||||||| |||||||||||||| || ||||| ||| ||||||||||||    
T  27545012 gaaccccggaccttgcatatattatacattgtccttaccaactgagataagctcacggggaca 27544950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 38553894 - 38553812
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||| ||||||||||| ||||| | |||||||||||||| || |||||| |||| || ||||| |||  ||||||||||    
T  38553894 tttttgtgatgtccgaggttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaagttcacggggac 38553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 614
Target Start/End: Original strand, 42227809 - 42227847
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtcctta 614  Q
    |||||||||||||||||||||||| || |||||||||||    
T  42227809 ttgaacctcgaaccttacatatattatgcattgtcctta 42227847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 1399208 - 1399155
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||| |||||||||| |||||||| || || |||||||||||||||| |||||    
T  1399208 accttgcatatatcatgcattgtccataccaactgagttaaactcacgaggaca 1399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 386 - 554
Target Start/End: Original strand, 7241266 - 7241434
Alignment:
Q  386 cagttaacattgtgatgagtagaaacaattctcattattgaaatcaatgtgctaagtgaattacaaagtggtatttcatcaaatatatactcag---cga 482  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    ||    
T  7241266 cagttaacactatgatgagtagaaacaattctcattattgaaatgaatgtgctaaatgaattacaaagtggtacttcatcaaatatatactcagtgatga 7241365  T
Q  483 agtccctaaaacaggataaactaattctgttatatacaattattatttgaccgttactaactaacttctatt 554  Q
    ||| |||||||||| | ||||   ||||||||| |||| |||||||||||| |||| |||||||||||||||    
T  7241366 agttcctaaaacagaaaaaac---ttctgttatgtacagttattatttgacagttagtaactaacttctatt 7241434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 638
Target Start/End: Original strand, 42208449 - 42208535
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgggga 638  Q
    |||| ||||||||| |||||||||| |||||||| ||||| ||||||| || ||||||||||| || ||||| |||| |||||||||    
T  42208449 ttttttttttgtggggtccgaggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagctaaattcacgggga 42208535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 630
Target Start/End: Original strand, 38489187 - 38489260
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaact 630  Q
    |||||||||||| |||| || ||||| |||||||| |||||||||| |||||| ||||||| ||||||||||||    
T  38489187 tttttgtggtgttcgagattcgaaccccgaaccttgcatatatcatgcattgttcttatcaactgagttaaact 38489260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 640
Target Start/End: Complemental strand, 7553760 - 7553672
Alignment:
Q  553 ttttatttttgtggtgtccg-aggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| ||||||||||||||| || |||||||| | ||||| ||||||| || |||||||| || || |||||||||||||||| |||||    
T  7553760 ttttttttttgtggtgtccggagtttgaaccttggaccttgcatatattatgcattgtccctaccaactgagttaaactcacgaggaca 7553672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 623
Target Start/End: Complemental strand, 9071039 - 9070968
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgag 623  Q
    |||| ||||||||||||| || ||| |||||||| ||||||||||||| |||||||||||||| || |||||    
T  9071039 ttttgtttttgtggtgtctgaagttcgaacctcggaccttacatatattatacattgtccttaccaactgag 9070968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 635
Target Start/End: Original strand, 16843503 - 16843586
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgg 635  Q
    |||| ||||||||||||||  |||| ||||| |||||||| ||||||| |||||||||||||||||   ||||||| |||||||    
T  16843503 ttttttttttgtggtgtccagggttcgaaccacgaaccttgcatatattatacattgtccttatcaatcgagttaagctcacgg 16843586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 635
Target Start/End: Complemental strand, 36919366 - 36919309
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgg 635  Q
    |||||| ||||||||||||||| ||||||||| |||| || ||||||||| |||||||    
T  36919366 gaaccttgaaccttacatatattatacattgttcttaccaactgagttaagctcacgg 36919309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 632
Target Start/End: Original strand, 13284269 - 13284325
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactca 632  Q
    ||||||||| ||||||| |||||| ||||||||| | ||||| ||||||||||||||    
T  13284269 ttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaaactca 13284325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 634
Target Start/End: Original strand, 19701359 - 19701406
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||||| || |||| ||||||||| ||||||||||||||||    
T  19701359 accttacatatattatgcattatccttatcaactgagttaaactcacg 19701406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 10967252 - 10967203
Alignment:
Q  593 catatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    ||||||| || |||||| |||||||  |||||||||||||||||||||||    
T  10967252 catatattatgcattgttcttatcaattgagttaaactcacggggacact 10967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 553 - 636
Target Start/End: Original strand, 9333960 - 9334044
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggg 636  Q
    |||| |||||||||||||||||||| ||||| | |||||||||||||| || |||||||||| ||| |||||||||||| |||||    
T  9333960 ttttttttttgtggtgtccgaggttcgaaccccaaaccttacatatattatgcattgtccttgtcaactgagttaaacttacggg 9334044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 15291675 - 15291758
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||||||||| ||| ||||||| |||||| ||||||| || ||||||||||| || || |||||| |||||| |||||    
T  15291675 tttttgtggtgtccgaagttcgaacctcaaaccttgcatatattattcattgtccttaccaactaagttaagctcacgaggaca 15291758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 627
Target Start/End: Complemental strand, 8831287 - 8831213
Alignment:
Q  553 ttttatttttgtggtgtccgaggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaa 627  Q
    |||| ||||||||||| ||||||||||||| || ||||| |||| || || ||||||||||| || |||||||||    
T  8831287 ttttttttttgtggtggccgaggttgaaccccggaccttgcataaattatgcattgtccttaccaactgagttaa 8831213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 15169988 - 15169931
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    ||||||| |||||||||||||||| || |||||| |||| |||||||| |||||||||    
T  15169988 ttgaaccccgaaccttacatatattatgcattgtacttaccagctgagctaaactcac 15169931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 15178760 - 15178703
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    ||||||| |||||||||||||||| || |||||| |||| |||||||| |||||||||    
T  15178760 ttgaaccccgaaccttacatatattatgcattgtacttaccagctgagctaaactcac 15178703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 633
Target Start/End: Original strand, 24623321 - 24623378
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    ||||||| |||||||||||||||| || |||||||| ||||| ||||| |||||||||    
T  24623321 ttgaaccccgaaccttacatatattatgcattgtccatatcaactgagctaaactcac 24623378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 610
Target Start/End: Complemental strand, 4826372 - 4826313
Alignment:
Q  552 attttatttttgtggtgtccg-aggttgaacctcgaaccttacatatatcatacattgtc 610  Q
    ||||| ||||||||||| ||| || |||||||||||||||||||||||| || |||||||    
T  4826372 attttttttttgtggtggccggagtttgaacctcgaaccttacatatattatgcattgtc 4826313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Complemental strand, 8569785 - 8569702
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||| ||| |||| ||||| || ||||| ||||||| || |||||||| || ||  |||||||||||||||||||||    
T  8569785 tttttgtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaattgagttaaactcacggggaca 8569702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 640
Target Start/End: Original strand, 31140825 - 31140880
Alignment:
Q  585 gaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||| ||||||| ||||||| || |||||||||||||||| |||||| |||||    
T  31140825 gaaccttgcatatattatacattatctttatcagctgagttaagctcacgaggaca 31140880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 633
Target Start/End: Complemental strand, 33608380 - 33608337
Alignment:
Q  590 ttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||    
T  33608380 ttacatatattatacattgtccttatcaactgagataaactcac 33608337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 642
Target Start/End: Complemental strand, 2105962 - 2105896
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    |||||||||||||||||||||||| || ||||||  ||| || | ||| |||||||||| |||||||    
T  2105962 ttgaacctcgaaccttacatatattatgcattgtttttaccaaccgagctaaactcacgaggacact 2105896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 641
Target Start/End: Complemental strand, 9987127 - 9987073
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggacac 641  Q
    ||||||||||||  || ||||||||||| || ||||||||| |||||||||||||    
T  9987127 accttacatataatatgcattgtccttaccaactgagttaagctcacggggacac 9987073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 639
Target Start/End: Original strand, 10320440 - 10320498
Alignment:
Q  581 cctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||||||| |||||| ||||||||| |||| || ||||||||| |||||| ||||    
T  10320440 cctcgaaccttatatatatgatacattgttcttaccaactgagttaagctcacgaggac 10320498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 15187120 - 15187058
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgggga 638  Q
    |||||||||| ||||| ||||||| || |||||| ||||||||||||| ||| ||||| ||||    
T  15187120 ttgaacctcggaccttgcatatattatgcattgtacttatcagctgagctaagctcacaggga 15187058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 638
Target Start/End: Original strand, 15473486 - 15473548
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgggga 638  Q
    |||||||||| ||||| ||||||| || |||||| ||||||||||||| ||| ||||| ||||    
T  15473486 ttgaacctcggaccttgcatatattatgcattgtacttatcagctgagctaagctcacaggga 15473548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 633
Target Start/End: Original strand, 28757035 - 28757085
Alignment:
Q  583 tcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    ||||||||| ||||||| |||||||||||||| || ||||||||| |||||    
T  28757035 tcgaaccttgcatatattatacattgtccttaccaactgagttaagctcac 28757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 884075 - 884136
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||||| ||||||||||||||||| |||||||||| |||  | || ||| |||||||||||    
T  884075 gaacctcaaaccttacatatatcatgcattgtccttgtcaattaagctaagctcacggggac 884136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 640
Target Start/End: Original strand, 6470623 - 6470684
Alignment:
Q  579 aacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| |||| ||||||||||| || ||||||| |||||| ||||||||| ||||||| ||||    
T  6470623 aaccccgaaacttacatatattatgcattgtctttatcaactgagttaagctcacggagaca 6470684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 633
Target Start/End: Complemental strand, 9923321 - 9923240
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| |||||||||||||| ||||| ||| | ||||||||  |||||| || ||||||||||||||  |||| |||||||||    
T  9923321 ttttttttttgtggtgtccaaggtttgaatcccgaaccttgtatatattatgcattgtccttatcaattgagctaaactcac 9923240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 6000128 - 6000211
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||||| |||| |||||||| ||||| ||||||| || ||||||||| | || ||||||||||||||||||||||    
T  6000128 tttttgtggtgtccggggtttgaacctcggaccttgcatatattatgcattgtcctaaccaactgagttaaactcacggggaca 6000211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 640
Target Start/End: Original strand, 9639797 - 9639885
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| |||||||||||||||||||| ||||  || ||||| ||||||| || ||||||||||| ||  |||||||| ||||||||||||    
T  9639797 ttttttttttgtggtgtccgaggttcgaactccggaccttgcatatattatgcattgtccttaccaagtgagttaagctcacggggaca 9639885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 642
Target Start/End: Complemental strand, 17669721 - 17669636
Alignment:
Q  558 tttttgtggtgtccg-aggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    ||||||||||| ||| || ||||||| |||||||| ||||||| ||||||||||| ||||| |||||| || |||||  |||||||    
T  17669721 tttttgtggtggccggagtttgaaccccgaaccttgcatatattatacattgtccctatcaactgagtcaagctcacaaggacact 17669636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 640
Target Start/End: Original strand, 24124837 - 24124898
Alignment:
Q  579 aacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||| ||||||| || ||||||||||| || ||||| ||||||||||| ||||    
T  24124837 aacctcgaaccttgcatatattatgcattgtccttaacaactgagctaaactcacggagaca 24124898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 633
Target Start/End: Original strand, 33153860 - 33153941
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| |||||||||||| || |||| |||||||| ||||||||||||| || |||||||| || || ||||||||| |||||    
T  33153860 ttttttttttgtggtgttcggggtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcac 33153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 635
Target Start/End: Complemental strand, 33577975 - 33577927
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacgg 635  Q
    ||||||||||||| |||||||||||||| || ||||| |||||||||||    
T  33577975 accttacatatattatacattgtccttagcaactgagctaaactcacgg 33577927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 2817358 - 2817441
Alignment:
Q  558 tttttgtggtgtccgagg-ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||||| || || |||||| ||| ||||||||||||| || ||||||||||| || ||||| |||| ||| |||||||    
T  2817358 tttttgtggtgttcggggcttgaacttcggaccttacatatattatgcattgtccttaccaactgagctaaattcatggggaca 2817441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 30678798 - 30678881
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||| |||| ||| |||||  ||||||||||||||| || |||||||| || || ||||||||| |||||| |||||    
T  30678798 tttttgtggtggccgaagtttgaaccatgaaccttacatatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 640
Target Start/End: Original strand, 39096873 - 39096908
Alignment:
Q  605 attgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39096873 attgtccttatcagctgagttaaactcacagggaca 39096908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 47528432 - 47528515
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| |||||||||| |||| |||||||| ||||| | ||||| || ||||||||||| || ||||| ||| ||||||||||||    
T  47528432 ttttggtggtgtccggggttcgaacctcggaccttgcgtatattatgcattgtccttaccaactgagctaagctcacggggaca 47528515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 634
Target Start/End: Complemental strand, 3777775 - 3777717
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||||||||  |||||| ||||||| ||| ||||| ||||||||| ||||||    
T  3777775 ttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagctcacg 3777717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 632
Target Start/End: Complemental strand, 13261218 - 13261172
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactca 632  Q
    |||||||||||||| |||||||||| ||| || ||||||||||||||    
T  13261218 aaccttacatatattatacattgtctttaccaactgagttaaactca 13261172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 634
Target Start/End: Complemental strand, 22021500 - 22021418
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||||| || |||||||| ||||  || | ||||||||||| |||||||||||||| || ||||| ||| ||||||    
T  22021500 ttttatttttgtgctggccgaggtttgaacgccggatcttacatatattatacattgtccttagcaactgagctaagctcacg 22021418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 630
Target Start/End: Complemental strand, 30937672 - 30937626
Alignment:
Q  584 cgaaccttacatatatcatacattgtccttatcagctgagttaaact 630  Q
    |||||||| ||||||| |||| |||||||||||||||||| ||||||    
T  30937672 cgaaccttgcatatattatacgttgtccttatcagctgagctaaact 30937626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 16967179 - 16967256
Alignment:
Q  558 tttttgtggtgtccg-aggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||| ||| || |||||||||||||||| ||||||| || |||||||| ||||| || || ||| ||||||    
T  16967179 tttttgtggtggccggagtttgaacctcgaaccttgcatatattatgcattgtccatatcaactaagctaagctcacg 16967256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 17221526 - 17221587
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||| ||||| ||||||| || |||||| |||| || || ||||||||||||||||||    
T  17221526 gaacctcggaccttgcatatattatgcattgttcttaccaacttagttaaactcacggggac 17221587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 42964585 - 42964503
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||||||||||| ||| ||||  |||||||||||||||| ||||||||||||||||| ||||| |||  ||||||||||    
T  42964585 tttttgtggtgtccgatgtttgaacaccgaaccttacatatattatacattgtccttatcaactgagataagttcacggggac 42964503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 40446040 - 40445976
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||  ||||| ||||||| || |||||||||||||| |||||||||||||||| |||||    
T  40446040 ttgaacctcagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 640
Target Start/End: Original strand, 9123824 - 9123913
Alignment:
Q  552 attttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||| ||||||||||||| |||||| |||| ||| | ||||||||||| || ||||||| ||| || ||||||||| ||||| ||||||    
T  9123824 attttttttttgtggtgtctgaggttcgaacttcggatcttacatatattatgcattgtctttaccaactgagttaagctcacagggaca 9123913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 23118036 - 23118113
Alignment:
Q  558 tttttgtggtgtcc-gaggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    |||| ||||||||| ||| | ||||| | |||||||||||||| || |||||||||||||| ||||||||| ||||||    
T  23118036 ttttggtggtgtccagagttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacg 23118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 4432162 - 4432110
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||||||||||| || |||||||||||||| |||||||||||| ||| ||||    
T  4432162 accttacatatattatgcattgtccttatcaactgagttaaacttacgaggac 4432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 640
Target Start/End: Original strand, 18147571 - 18147623
Alignment:
Q  588 ccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| ||||||| ||||||||||||||||| ||||||||| |||||| |||||    
T  18147571 ccttgcatatattatacattgtccttatcaactgagttaagctcacgtggaca 18147623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 640
Target Start/End: Complemental strand, 34206276 - 34206220
Alignment:
Q  584 cgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||| ||||||| || ||||||| ||| || ||||||||||||||||||||||    
T  34206276 cgaaccttgcatatattatgcattgtctttaccaactgagttaaactcacggggaca 34206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 639
Target Start/End: Original strand, 8882403 - 8882466
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||||| || ||||||||||||| || || |||| |||||| ||||||||| |||||||||||    
T  8882403 ttgaaccccggaccttacatatattatgcactgtcattatcaactgagttaagctcacggggac 8882466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 611
Target Start/End: Original strand, 21657378 - 21657437
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtcc 611  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| || ||||||||    
T  21657378 ttttttttttgtggtgtctgaggtttgaacctcaaaccttacatatattatgcattgtcc 21657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 627
Target Start/End: Complemental strand, 29695072 - 29695021
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaa 627  Q
    ||||||| |||||||||||||||| || |||||||| ||||| |||||||||    
T  29695072 ttgaaccacgaaccttacatatattatgcattgtccatatcaactgagttaa 29695021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 622
Target Start/End: Complemental strand, 3052336 - 3052290
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctga 622  Q
    |||||||||||||||| ||||||| ||||||||||| || |||||||    
T  3052336 ttgaacctcgaaccttgcatatattatacattgtccctaccagctga 3052290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 640
Target Start/End: Complemental strand, 32565607 - 32565517
Alignment:
Q  551 tattttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||| ||||||||||| || ||||| |||| ||| ||||||||||||| || |||| ||| || |||||||| ||| |||||| |||||    
T  32565607 tattttttttttgtggtggccaaggtttgaacttcggaccttacatatattatgcattatccctaccagctgagctaagctcacgaggaca 32565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 636
Target Start/End: Original strand, 8639344 - 8639393
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggg 636  Q
    ||||| ||||||| | ||||||||||||||| ||||||||| ||||||||    
T  8639344 accttgcatatattacacattgtccttatcaactgagttaagctcacggg 8639393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 16076488 - 16076431
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||||||  ||||||| ||||||| || |||||||| ||||||||||||||| |||||    
T  16076488 ttgaaccctgaaccttgcatatattatgcattgtccatatcagctgagttaagctcac 16076431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 636
Target Start/End: Complemental strand, 21316928 - 21316879
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggg 636  Q
    ||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  21316928 acctttcatatattatgcattgtccttaccaactgagttaaactcacggg 21316879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 39842014 - 39842067
Alignment:
Q  574 ggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaa 627  Q
    ||||||||||| |||||||||||||| || |||||||||||||| |||||||||    
T  39842014 ggttgaacctcaaaccttacatatattatgcattgtccttatcaactgagttaa 39842067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 627
Target Start/End: Complemental strand, 56096261 - 56096210
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaa 627  Q
    ||||||| |||||||||||||||| || |||||||||||||| |||||||||    
T  56096261 ttgaaccacgaaccttacatatattatgcattgtccttatcaactgagttaa 56096210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 623
Target Start/End: Original strand, 46434745 - 46434811
Alignment:
Q  558 tttttgtggtg-tccgaggttgaacctcgaaccttacatatatcatacattgtccttatcagctgag 623  Q
    ||||||||||| || ||| ||||||||| |||||||||||||| || |||||||||||||| |||||    
T  46434745 tttttgtggtgatcggagtttgaacctcaaaccttacatatattatgcattgtccttatcaactgag 46434811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 639
Target Start/End: Original strand, 16733505 - 16733586
Alignment:
Q  559 ttttgtggtgtccgagg-ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||||| |||||| |||||||||| | ||| ||||||| ||||||| || |||||| ||||||||| |||||| ||||    
T  16733505 ttttgtggtggccgagggttgaacctcggatcttgcatatattatacattatctttatcaactgagttaagctcacgaggac 16733586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 636
Target Start/End: Complemental strand, 11166767 - 11166683
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggg 636  Q
    |||| ||||||||||||||| |||| ||||||   ||||| ||||||| |||||||||||||| || || || ||||||||||||    
T  11166767 ttttttttttgtggtgtccggggttcgaaccttagaccttgcatatattatacattgtccttaccaactaagataaactcacggg 11166683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 634
Target Start/End: Complemental strand, 30380577 - 30380529
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    |||||| ||||||| |||||||||||||| || ||||||||||||||||    
T  30380577 aaccttgcatatattatacattgtccttaccaactgagttaaactcacg 30380529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 43722822 - 43722758
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||| || ||||||||||||| || |||||||| || || |||||||||||||||| |||||    
T  43722822 ttgaaccccggaccttacatatattatgcattgtccataccaactgagttaaactcacgaggaca 43722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Complemental strand, 7230356 - 7230273
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||| |||||||| ||||| || ||||| ||||||| || ||||||||||| || ||||| ||| |||||| |||||    
T  7230356 tttttgtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 7230273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 640
Target Start/End: Complemental strand, 9392977 - 9392926
Alignment:
Q  589 cttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||| || |||||||||||| | |||||||||||||| |||||||    
T  9392977 cttacatatataatgcattgtccttattaactgagttaaactcatggggaca 9392926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 633
Target Start/End: Complemental strand, 27951455 - 27951408
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||||||||||||||||||||| || ||||||  ||||||||||||||    
T  27951455 aaccttacatatatcatacattatctttatcaattgagttaaactcac 27951408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 51298681 - 51298764
Alignment:
Q  558 tttttgtggtgtccgaggttgaa-cctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||||| | || || || |||||||| ||||||| ||| ||||||||||||| |||||||||  |||||| ||||    
T  51298681 tttttgtggtgtccgggattcaaaccccgaaccttgcatatattatatattgtccttatcaactgagttaagttcacggagaca 51298764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 641
Target Start/End: Original strand, 7371539 - 7371617
Alignment:
Q  564 tggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacac 641  Q
    ||||||||| |||| ||||| || ||||| ||||||| ||  ||||||||||||| ||||||||| ||||||| |||||    
T  7371539 tggtgtccggggttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctcacggagacac 7371617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 12263309 - 12263255
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaact 630  Q
    |||||||||  ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  12263309 ttgaacctcagaccttacatatattatacattgtccttgtcaactgagctaaact 12263255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 642
Target Start/End: Complemental strand, 19908773 - 19908683
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    |||| |||||||||||  || |||| |||||||| ||||| ||||||| || ||||||||||| || ||||||||| ||||| || |||||    
T  19908773 ttttttttttgtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcacaggaacact 19908683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 640
Target Start/End: Complemental strand, 21465658 - 21465604
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||||||| || |||||||||||  | |||||||||||||||| |||||    
T  21465658 aaccttacatatattatgcattgtccttactaactgagttaaactcacgaggaca 21465604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 633
Target Start/End: Original strand, 34595943 - 34595997
Alignment:
Q  579 aacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| ||||| |||||||||| || ||||||||||| || |||||||||||||||    
T  34595943 aaccccgaactttacatatattatgcattgtccttaccaactgagttaaactcac 34595997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 641
Target Start/End: Original strand, 10336966 - 10337055
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacac 641  Q
    |||| |||||||||||| || |||| ||||| ||||||||||||| || || ||||||| ||  || ||||||||| |||| ||||||||    
T  10336966 ttttttttttgtggtgttcggggtttgaaccccgaaccttacatacattatgcattgtctttgccaactgagttaagctcatggggacac 10337055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 639
Target Start/End: Complemental strand, 18635569 - 18635524
Alignment:
Q  594 atatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||| || |||||||||||||| ||||||||| |||||||||||    
T  18635569 atatattatgcattgtccttatcaactgagttaagctcacggggac 18635524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 633
Target Start/End: Complemental strand, 47704663 - 47704582
Alignment:
Q  553 ttttatttttgtggtgtccgaggttgaa-cctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| ||||||||||  |||||||| || ||||||||||||||||||| ||||||| | | || || ||||||||| |||||    
T  47704663 ttttttttttgtggttgccgaggtttaaacctcgaaccttacatatattatacattattcataccaactgagttaagctcac 47704582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 52936698 - 52936641
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    ||||||||| |||||||||||||| |||||||||   ||||| ||||||||| |||||    
T  52936698 ttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaagctcac 52936641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 2563986 - 2563922
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||||||||||||||||| || |||| |  |||||| ||||||||| ||||||||||||    
T  2563986 ttgaacctcgaaccttacatatattattcattatttttatcaactgagttaagctcacggggaca 2563922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 27397597 - 27397680
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||||| |||| ||||||   ||||| ||||||| ||||||||||| || || |||||||||||||||| |||||    
T  27397597 tttttgtggtgtccggggttcgaaccttagaccttgcatatattatacattgtccataccaactgagttaaactcacgtggaca 27397680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 627
Target Start/End: Complemental strand, 53222007 - 53221964
Alignment:
Q  584 cgaaccttacatatatcatacattgtccttatcagctgagttaa 627  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  53222007 cgaaccttacatatattatacattgtccttatcaactgagttaa 53221964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 640
Target Start/End: Complemental strand, 55126082 - 55125999
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||| | |||| |||||||||||||| ||||||| ||  |||||||| |||| ||||| ||| ||||||||||||    
T  55126082 tttttgtggtgtctggggtttgaacctcgaaccttgcatatattatgtattgtcctcatcaactgagctaagctcacggggaca 55125999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 640
Target Start/End: Complemental strand, 22462355 - 22462305
Alignment:
Q  590 ttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||| || |||||||||||||| ||||||||| ||||||||||||    
T  22462355 ttacatatattatgcattgtccttatcaactgagttaagctcacggggaca 22462305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 7827554 - 7827501
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||| |||||    
T  7827554 accttacatatattatgcattgtccatatcaactgagttaaactcacgaggaca 7827501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 7829942 - 7829889
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||| |||||    
T  7829942 accttacatatattatgcattgtccatatcaactgagttaaactcacgaggaca 7829889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 640
Target Start/End: Complemental strand, 5349585 - 5349521
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||| ||||| ||||||| || ||||||||||| ||  ||||||||||||||| |||||    
T  5349585 ttgaacctcggaccttgcatatataatgcattgtccttaccaagtgagttaaactcacgaggaca 5349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 640
Target Start/End: Original strand, 38898223 - 38898277
Alignment:
Q  586 aaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||||||||||||| |||||||||||||| || ||||| ||| ||||| ||||||    
T  38898223 aaccttacatatattatacattgtccttaccaactgagataagctcacagggaca 38898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 636
Target Start/End: Complemental strand, 47039482 - 47039424
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggg 636  Q
    ||||| ||||| || ||||||| || |||||||||||||| ||||||||| ||||||||    
T  47039482 gaaccccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacggg 47039424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 576 - 634
Target Start/End: Original strand, 47377353 - 47377411
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||||||||  |||||| || ||||||||||| || ||||||||| ||||||    
T  47377353 ttgaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcacg 47377411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 641
Target Start/End: Original strand, 2584012 - 2584077
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacac 641  Q
    |||||||||| | ||| ||||||| || |||||||||||| || |||| |||||||||| ||||||    
T  2584012 ttgaacctcggatcttgcatatataatgcattgtccttataagttgagctaaactcacgaggacac 2584077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 644
Target Start/End: Original strand, 27199437 - 27199493
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggacactaa 644  Q
    ||||||||||||| |||||||||||||| || ||||| ||| |||||||| |||||||    
T  27199437 accttacatatattatacattgtcctta-caactgagctaagctcacgggaacactaa 27199493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 634
Target Start/End: Complemental strand, 31085056 - 31085007
Alignment:
Q  585 gaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||||||| || || ||||||||||| ||||| ||||||||||    
T  31085056 gaaccttacatatattatgcactgtccttatcaactgagataaactcacg 31085007  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 640
Target Start/End: Complemental strand, 24393326 - 24393238
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| ||||||||||||||| |||| |||||||  ||||| ||||||| || ||||||||||| || ||||| ||| ||||||||||||    
T  24393326 ttttttttttgtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctcacggggaca 24393238  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 640
Target Start/End: Complemental strand, 12124621 - 12124538
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||  |||||| ||||| || ||||| ||||||| || ||||||||||| || ||||| ||||||||||||||||    
T  12124621 tttttgtggtgtttgaggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaaactcacggggaca 12124538  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 578 - 641
Target Start/End: Original strand, 12893250 - 12893313
Alignment:
Q  578 gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggacac 641  Q
    |||||| | ||||||||||||| ||||||||| ||||||| ||||| ||| |||||||||||||    
T  12893250 gaaccttggaccttacatatattatacattgttcttatcaactgagctaagctcacggggacac 12893313  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 634
Target Start/End: Original strand, 40967375 - 40967433
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||| |||||| ||||||| || |||||||||||||| ||||||||| ||||||    
T  40967375 ttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacg 40967433  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 19512931 - 19512850
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgggga 638  Q
    |||| ||||||||||||||| | ||| |||||||| ||||||  || ||| ||||||| |||||||||||| ||||||||||    
T  19512931 ttttggtggtgtccgaggttcggaccccgaaccttgcatataatatgcatcgtccttaccagctgagttaagctcacgggga 19512850  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 39761513 - 39761432
Alignment:
Q  558 tttttgtggtgtccgaggttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    |||||||| |||||| |||| || | |  ||||| ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  39761513 tttttgtgctgtccggggttcaaacccagaccttgcatatattatgcattgtccttatcaactgagctaaactcacggggac 39761432  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 639
Target Start/End: Original strand, 6723092 - 6723144
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  6723092 accttgcatatattatacattgtccatatcaactgagttaaactcacgaggac 6723144  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 642
Target Start/End: Original strand, 16204832 - 16204887
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggacact 642  Q
    ||||| ||||||| || |||||||||||||| ||||||||| ||||| ||||||||    
T  16204832 accttgcatatattatgcattgtccttatcaactgagttaagctcacagggacact 16204887  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 37320502 - 37320585
Alignment:
Q  558 tttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    |||| |||||||||  |||| |||||||||||||| ||||||| || ||||||| ||| || ||||||||| |||||| |||||    
T  37320502 ttttggtggtgtccatggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacgtggaca 37320585  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 639
Target Start/End: Original strand, 42181307 - 42181370
Alignment:
Q  576 ttgaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacggggac 639  Q
    ||||| |||||||||| |||||||||| ||||||| |||||||||  | ||| |||||||||||    
T  42181307 ttgaatctcgaaccttgcatatatcatgcattgtctttatcagctacgctaagctcacggggac 42181370  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 9389514 - 9389461
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||| ||||||| ||||||| |||||||||  ||||||||||||||| |||||    
T  9389514 accttgcatatattatacattatccttatcaattgagttaaactcacgtggaca 9389461  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 633
Target Start/End: Complemental strand, 12413574 - 12413493
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| |||||||||||| || |||| |||||||  ||||| ||||||| || |||||||||||||| | ||| |||||||||    
T  12413574 ttttttttttgtggtgtacggggtttgaacctcagaccttgcatatattatgcattgtccttatcaaccgagataaactcac 12413493  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 633
Target Start/End: Complemental strand, 12425634 - 12425553
Alignment:
Q  553 ttttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcac 633  Q
    |||| |||||||||||| || |||| |||||||  ||||| ||||||| || |||||||||||||| | ||| |||||||||    
T  12425634 ttttttttttgtggtgtacggggtttgaacctcagaccttgcatatattatgcattgtccttatcaaccgagataaactcac 12425553  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 21497743 - 21497666
Alignment:
Q  558 tttttgtggtgtccgaggttgaa-cctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacg 634  Q
    ||||||||||| |||||||| || ||||||||||| ||||||| || |||||| |||| || | ||||||| ||||||    
T  21497743 tttttgtggtggccgaggtttaaacctcgaaccttgcatatattatgcattgttcttaccaaccgagttaagctcacg 21497666  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 635
Target Start/End: Complemental strand, 22441260 - 22441175
Alignment:
Q  551 tattttatttttgtggtgtccgaggtt-gaacctcgaaccttacatatatcatacattgtccttatcagctgagttaaactcacgg 635  Q
    |||||||||||||| ||||||  |||| |||| || ||| |||||||||| ||  ||||||||||||| ||||| |||||| ||||    
T  22441260 tattttatttttgtagtgtccagggttcgaacttcaaacattacatatatgatgtattgtccttatcaactgagctaaacttacgg 22441175  T

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Target: scaffold1327 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 602 - 549
Alignment:
Q  587 accttacatatatcatacattgtccttatcagctgagttaaactcacggggaca 640  Q
    ||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |||||    
T  602 accttacatatattatacactgtccttatcaactgagctaagctcacgaggaca 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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