View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9355-LTR4-TNT-insertion-4 (Length: 277)
Name: F9355-LTR4-TNT-insertion-4
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 36977495 - 36977764
Alignment:
| Q |
8 |
caaagttacatgattaaaagataggtccaacactttgaggttgctgaagttagctaaatgaacatcactgataattccctccatatcgtttccagctaag |
107 |
Q |
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| T |
36977495 |
caaagttacatgattaaaagataggtccaacactttgaggttgctgaagttagctaaatgaacatcactgataattccctccatatcgtttccagctaag |
36977594 |
T |
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| Q |
108 |
tccaacacaaccaaatttgataactggtgaatgcttctttccaatgatccgtttagttgattaatagaaagacgcaattctttcaaactatttaggccat |
207 |
Q |
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| T |
36977595 |
tccaacacaaccaaatttgataactggtgaatgcttctttccaatgatccgtttagttgattaatagaaagacgcaattctttcaaactatttaggccat |
36977694 |
T |
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| Q |
208 |
gatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
277 |
Q |
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| T |
36977695 |
gatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
36977764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 36965756 - 36966025
Alignment:
| Q |
8 |
caaagttacatgattaaaagataggtccaacactttgaggttgctgaagttagctaaatgaacatcactgataattccctccatatcgtttccagctaag |
107 |
Q |
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| T |
36965756 |
caaagttacatcattaaaagataggtccaacactttgaggttgctaaagtttgcaagatgaacatcactgataattccctccatattgtttacagctaag |
36965855 |
T |
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| Q |
108 |
tccaacacaaccaaatttgataactggtgaatgcttctttccaatgatccgtttagttgattaatagaaagacgcaattctttcaaactatttaggccat |
207 |
Q |
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| T |
36965856 |
ttcaacacaaccaaacttgataactggtgaatgcttctttccaatgatccgtttagttgattaatagaaagatgcaattctttcaaattatttaggccat |
36965955 |
T |
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| Q |
208 |
gatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
277 |
Q |
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| T |
36965956 |
gatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
36966025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 5867576 - 5867307
Alignment:
| Q |
8 |
caaagttacatgattaaaagataggtccaacactttgaggttgctgaagttagctaaatgaacatcactgataattccctccatatcgtttccagctaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
5867576 |
caaagttacatgattaaaagataggtccaacactttgaggttgctaaagtttgcaagatgaacatcactgataattccctccatattgtttacagctaaa |
5867477 |
T |
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| Q |
108 |
tccaacacaaccaaatttgataactggtgaatgcttctttccaatgatccgtttagttgattaatagaaagacgcaattctttcaaactatttaggccat |
207 |
Q |
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| T |
5867476 |
ttcaacacaaccaaatttgataactggtaaatgcttctttccaatgacccgtttagttgattaatagaaagacgcaattctttcaaactattttggccat |
5867377 |
T |
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| Q |
208 |
gatcttgtcccaatgtggaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
277 |
Q |
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| T |
5867376 |
gatcttgtcccaatgttgaaggtattgagccactgagcatattatatgatagatcaagtgctacaagatt |
5867307 |
T |
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