View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9355-LTR4-TNT-insertion-6 (Length: 522)
Name: F9355-LTR4-TNT-insertion-6
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 109 - 512
Target Start/End: Complemental strand, 2773891 - 2773488
Alignment:
| Q |
109 |
agaatgtcttgttaggttcaacttcatagaatctctcaattcacaacccaattcatattttaaatgtctcaataaaataaaacataaaagatttcatcaa |
208 |
Q |
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| T |
2773891 |
agaatgtcttgttaggttcaacttcatagaatctctcaattcacaacccaattcatattttaaatgtctcaataaaataaaacataaaagatttcatcaa |
2773792 |
T |
|
| Q |
209 |
acacatggaatcattctcaagaaattcagacattgtttttgaaaatactgaataaaataaccaaccccgatgtcaccaatcaaaacgaggtaaaatctca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2773791 |
acacatggaatcattctcaagaaattcagacattgtttttgaaaatactgaataaaataaccaaccccgatgtcaccaatcaaaacgaggtaaaatctca |
2773692 |
T |
|
| Q |
309 |
atataaagtacttgacatgcaagtcaataaaacataataaaaatagcaaagtcgccaagcaaatgtaaaactagaatgatgctccatctctacgtgtcac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2773691 |
atataaagtacttgacatgcaagtcaataaaacataataaaaatagcaaagtcgccaagcaaatgtaaaactagaatgatgctccatctctacgtgtcac |
2773592 |
T |
|
| Q |
409 |
ctgcaagctgcgtgagtaatccaatcaggtaaaacataaaaaccaatagagcgaacatgcacaagtagtctgtagtcacctattcacattcaacaacata |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2773591 |
ctgcaagctgcgtgagtaatccaatcaggtaaaacataaaaaccaatagagcgaacatgcacaagtagtctgtagtcacctattcacattcaacaacata |
2773492 |
T |
|
| Q |
509 |
atta |
512 |
Q |
| |
|
|||| |
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|
| T |
2773491 |
atta |
2773488 |
T |
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