View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9355-LTR4-TNT-insertion-7 (Length: 449)
Name: F9355-LTR4-TNT-insertion-7
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 42292659 - 42292882
Alignment:
| Q |
8 |
tcttcacaatacaaatggcttcaaggggatttacagaagattaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattcta |
107 |
Q |
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| T |
42292659 |
tcttcacaatacaaatggcttcaaggggatttacagaagattaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattcta |
42292758 |
T |
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| Q |
108 |
atcaagctcatcagggtgaggctgaatctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgt |
207 |
Q |
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| T |
42292759 |
atcaagctcatcagggtgaggctgaatctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgt |
42292858 |
T |
|
| Q |
208 |
tcatgcatacgaacgctttgtaag |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
42292859 |
tcatgcatacgaacgctttgtaag |
42292882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 259 - 439
Target Start/End: Original strand, 42292910 - 42293090
Alignment:
| Q |
259 |
gtctagttgaagtgctggttcaatcgggttgaaatcacgatgcagataactcactcacatactaattattcttttattttcttagacacgggtttataaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42292910 |
gtctagttgaagtgctggttcaatcgggttgaaatcacgatgcagataactcactcacatactaattattcttttattttcttagacacgggtttataaa |
42293009 |
T |
|
| Q |
359 |
gataaaggtgacaattgtggtccagtgcatattaccattggggatggaggcaatcgtgaaggcctagccacaaggtaatta |
439 |
Q |
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| T |
42293010 |
gataaaggtgacaattgtggtccagtgcatattaccattggggatggaggcaatcgtgaaggcctagccacaaggtaatta |
42293090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 26276302 - 26276340
Alignment:
| Q |
191 |
gtttttacagggcatgttcatgcatacgaacgctttgta |
229 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||| |
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| T |
26276302 |
gttttttcagggcatgtccatgcatacgaacgctttgta |
26276340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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