View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9355-LTR4-TNT-insertion-8 (Length: 105)
Name: F9355-LTR4-TNT-insertion-8
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 17498185 - 17498099
Alignment:
| Q |
9 |
gtagaaacttaaaacatagctttttgttataattgtattggctcaccaaaatgacaatcccatcaccgttaatctaaacatgcatta |
95 |
Q |
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| T |
17498185 |
gtagaaacttaaaacatagctttttgttataattgtattggctcaccaaaatgacaatcccatcaccgttaatctaaacatgcatta |
17498099 |
T |
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