View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9355-LTR4-TNT-insertion-9 (Length: 557)
Name: F9355-LTR4-TNT-insertion-9
Description: F9355-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9355-LTR4-TNT-insertion-9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Complemental strand, 4441739 - 4441200
Alignment:
| Q |
8 |
gcttctaccacgttgtgaaagctgttcatgcttaaaacatcgacgaatttgtgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441739 |
gcttctaccacgttgtgaaagctgttcatgcttaaaacatcgatgaatttgtgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcg |
4441640 |
T |
|
| Q |
108 |
aagacccaaagtcattatcaatttggattttcagccttttcaaggaagctgggaggtaaacattctccaagctatcagataaaaagtgaaggtccaaagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441639 |
aagacccaaagtcattatcaatttggattttcagccttttcaaggaagctgggaggcaaacattctccaagctatcagataaaaagtgaaggtccaaagc |
4441540 |
T |
|
| Q |
208 |
ttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaacttatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441539 |
ttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaacttatt |
4441440 |
T |
|
| Q |
308 |
ggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaacaatgttatatcacatttcataactatttaggactgatactt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441439 |
ggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaataatgttatatcacatttcataactatttaggactgatactt |
4441340 |
T |
|
| Q |
408 |
aagattgaagtcatatacactttggtgtcggacaacaacacgacactaacatattggttacattcaattgcttacatatttgcaaagtattatcaaggtt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4441339 |
aagattgaagtcatatacactttggtgtcggacaacaacacgacactaacatattggttacattcaattgcttacatatttgcaaagtattatcaaggtt |
4441240 |
T |
|
| Q |
508 |
gacagggcgtgtgtaagtgtttcatagatttaggagatta |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4441239 |
gacagggcgtgtgtaagtgtttcatagatttaggagatta |
4441200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 32849720 - 32849759
Alignment:
| Q |
349 |
actgaggaacaaacaaacaatgttatatcacatttcataa |
388 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||| |
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| T |
32849720 |
actgaggaacaaacaagcaatgttatatcacaattcataa |
32849759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 17477970 - 17477932
Alignment:
| Q |
67 |
aatgttaaggtactcaagatctggtgcatttatttcaag |
105 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
17477970 |
aatgttaaggtactcaagattcggtgcatttatttcaag |
17477932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 29585432 - 29585470
Alignment:
| Q |
67 |
aatgttaaggtactcaagatctggtgcatttatttcaag |
105 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |
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|
| T |
29585432 |
aatgttaaggtactcaagatcaggcgcatttatttcaag |
29585470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 4427718 - 4427811
Alignment:
| Q |
68 |
atgttaaggtactcaagatctggtgcatttatttcaagcgaagacccaaagtcattatcaatttggattttcagccttttcaaggaagctggga |
161 |
Q |
| |
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|||| ||||||||||||||| ||||| || |||||||| ||| ||||| ||||||||||| |||| ||| ||||||||| |||| ||||| |
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| T |
4427718 |
atgtaaaggtactcaagatccggtgctttcatttcaaggtaagccccaacttcattatcaatgatgattgtcaaccttttcaaagaaggtggga |
4427811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 467
Target Start/End: Original strand, 8383000 - 8383437
Alignment:
| Q |
32 |
ttcatgcttaaaacatcgacgaatttgtgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcgaagacccaaagtcatta---tcaa |
128 |
Q |
| |
|
|||||| ||||||||||| ||| ||| |||||||||||| | ||||||||||||||| || |||||||||||||||| ||| | || ||| || | |
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|
| T |
8383000 |
ttcatgtttaaaacatcgctgaaactgtattggtaaatgtttatgtactcaagatctggcgcgtttatttcaagcgaaggcccgacctccttactctcta |
8383099 |
T |
|
| Q |
129 |
tttggattttcagccttttcaaggaagctgggaggtaaacattctccaagctatcagataaaaagtgaaggtccaaagcttcgatgtttgggcagccata |
228 |
Q |
| |
|
|| ||||||||||||||||||| || ||| ||| ||||||| |||||||||| | |||||| | ||| || | | |||||||||||||||||||| | |
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|
| T |
8383100 |
ttccaattttcagccttttcaaggtaggtggaaggcaaacattgtccaagctattggttaaaaatttaagatctagaacttcgatgtttgggcagccaca |
8383199 |
T |
|
| Q |
229 |
gaggagtgcatttacaaaagccacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtct |
328 |
Q |
| |
|
|| |||||||| || | || ||||||||| | ||||| || ||||||||||| |||||||| |||||||||||||||| ||| |||||| | || | |
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|
| T |
8383200 |
tagaagtgcattcaccataggcacttccacataaccgaagatgtcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgttt |
8383299 |
T |
|
| Q |
329 |
agatgaattccaccacaaatactgaggaacaaacaaacaatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatatacact |
428 |
Q |
| |
|
||||||||| || |||| |||| ||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||||| || ||||||||| |
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| T |
8383300 |
agatgaattgcattgcaaagactgtggaacaaacgaattattttatatcaca-ttcataactatttagcactgatacataagatttaatgtatatacact |
8383398 |
T |
|
| Q |
429 |
ttggtgtcggacaacaacacgacactaacatattggtta |
467 |
Q |
| |
|
|||| | |||||||||||||| ||||||||||||| |
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|
| T |
8383399 |
atggtaccaaacaacaacacgacatgaacatattggtta |
8383437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 8366977 - 8367361
Alignment:
| Q |
8 |
gcttctaccacgttgtgaaagctgttcatgcttaaaacatcgacgaatttgtgttggtaaatgttaaggtactcaagatctggtgcatttatttcaagcg |
107 |
Q |
| |
|
|||||||| || ||||| ||| | |||||| |||| |||||| |||| ||| |||||||||||| | ||||||||||||||| || |||||||||||| |
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|
| T |
8366977 |
gcttctacaacattgtgcaagtttttcatgtttaatacatcgctgaatctgtattggtaaatgttgatgtactcaagatctggcgcgtttatttcaagca |
8367076 |
T |
|
| Q |
108 |
aagacccaaagtcatta---tcaatttggattttcagccttttcaaggaagctgggaggtaaacattctccaagctatcagataaaaagtgaaggtccaa |
204 |
Q |
| |
|
||| || | |||| | || |||| ||||||||||||||||||| || ||| ||| ||||||| |||||||||| | || ||| | ||| || | |
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|
| T |
8367077 |
aaggaccgacctcatcactctctatttcaattttcagccttttcaaggtaggtggaaggaaaacattgtccaagctattggttagaaatttaagatctag |
8367176 |
T |
|
| Q |
205 |
agcttcgatgtttgggcagccatagaggagtgcatttacaaaagccacttccacgttaccgaggacatcaattagcagcatcttcagcgatggtaaactt |
304 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| || | || | || ||| | ||||| || ||||||||||| |||||||| |||||||||||| |
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|
| T |
8367177 |
agcttcgatgtttgggcagccacatagaagtgcattcaccatagggatttgcacataaccgaagatgtcaattagcagtatcttcagtgatggtaaactt |
8367276 |
T |
|
| Q |
305 |
attggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaacaatgttatatcacatttcataac |
389 |
Q |
| |
|
|||| |||| |||||| | || |||||||||| ||| || ||||||| | |||||||||| || |||||| | |||||||||| |
|
|
| T |
8367277 |
attgtcgtagagctttgaatgtttagatgaatttcactacgaatactgtgtaacaaacaaattatattatatgaaatttcataac |
8367361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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