View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9356-LTR4-TNT-insertion-1 (Length: 299)

Name: F9356-LTR4-TNT-insertion-1
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9356-LTR4-TNT-insertion-1
F9356-LTR4-TNT-insertion-1
[»] chr7 (8 HSPs)
chr7 (6-291)||(2327723-2328008)
chr7 (85-284)||(3956930-3957129)
chr7 (85-251)||(2335943-2336109)
chr7 (193-291)||(1087158-1087256)
chr7 (86-246)||(2319581-2319741)
chr7 (194-251)||(1552304-1552361)
chr7 (194-251)||(1559056-1559113)
chr7 (194-246)||(1543000-1543052)
[»] scaffold0491 (2 HSPs)
scaffold0491 (91-291)||(7723-7923)
scaffold0491 (86-253)||(3131-3304)
[»] chr8 (4 HSPs)
chr8 (86-253)||(18751385-18751555)
chr8 (86-253)||(18741325-18741498)
chr8 (86-253)||(18746289-18746462)
chr8 (86-219)||(18755533-18755669)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 2327723 - 2328008
Alignment:
Q  6 catgctagtcacatagcattataaagtttcttcatgcatcttagaacattatatgcaactcattaaatctcaacaacaacaaaaaatgaacttgacaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327723 catgctagtcacatagcattataaagtttcttcatgcatcttagaacattatatgcaactcattaaatctcaacaacaacaaaaaatgaacttgacaaaa 2327822  T
Q  106 tatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatctggggcaatgacatctcaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327823 tatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatctggggcaatgacatctcaac 2327922  T
Q  206 ttcaaatggaagcagatgttatacaaaataatggatggtggtacacttatggtggaggcttcaatatatccaatcgttgcaattgg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327923 ttcaaatggaagcagatgttatacaaaataatggatggtggtacacttatggtggaggcttcaatatatccaatcgttgcaattgg 2328008  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 3957129 - 3956930
Alignment:
Q  85 caaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgat 184  Q
    |||||||||||||||||||||||||| | | ||||| || ||| |||||||||||||  | | ||||||||||||||||||||| |||||||||||| ||    
T  3957129 caaaaaatgaacttgacaaaatatttttgttctaatatctatagtccaaaaatgtggaagatttttcttcttacttggggtttgttcatggggactcaat 3957030  T
Q  185 ctggggcaatgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacacttatggtggaggcttcaatatatccaatcgttg 284  Q
     ||    | |||||||||||||||||||||||||| |||  |||| ||||| || ||||||| |||| | || || || ||||||||| |||||||||||    
T  3957029 ttgtcatagtgacatctcaacttcaaatggaagcaaatgcaatactaaatagtgaatggtggaacacatctgatgcagacttcaatatctccaatcgttg 3956930  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 2335943 - 2336109
Alignment:
Q  85 caaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgat 184  Q
    |||||||||||||| |||||||||||| || | |||| | ||  |||||||||| || |||||||||||||||  |||  ||| ||  | || |||| ||    
T  2335943 caaaaaatgaacttaacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtactcaat 2336042  T
Q  185 ctggggcaatgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacac 251  Q
    |||   |||||| |||||||||||||||||||||| ||| ||||   |||| |||||||||| ||||    
T  2336043 ctgccacaatgaaatctcaacttcaaatggaagcaaatgctataatgaatagtggatggtggaacac 2336109  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 1087158 - 1087256
Alignment:
Q  193 atgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacacttatggtggaggcttcaatatatccaatcgttgcaattgg 291  Q
    ||||||||||||||||||||||||||| ||| ||||  ||| | |||||||||| |||||| || || | | |||||||||||  ||||||| ||||||    
T  1087158 atgacatctcaacttcaaatggaagcaaatgctataataaagagtggatggtggaacacttctgatgcacgtttcaatatatctgatcgttgtaattgg 1087256  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 2319581 - 2319741
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatc 185  Q
    ||||||||||||||| |||||| ||| || | |||||| ||  ||  ||||||||| ||||||||||||||| ||||  ||| ||  |||| |||| |||    
T  2319581 aaaaaatgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggcctttcattgtgggtactcaatc 2319680  T
Q  186 tggggcaatgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtgg 246  Q
    ||   || |||||||||||| ||| ||||||||| |||  |||  ||||| ||||||||||    
T  2319681 tgcctcagtgacatctcaacctcatatggaagcaaatgcgatattaaatagtggatggtgg 2319741  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 1552361 - 1552304
Alignment:
Q  194 tgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacac 251  Q
    |||||||||||||||||||||||||| |||  |||  ||||| |||||||||| ||||    
T  1552361 tgacatctcaacttcaaatggaagcaaatgcaatattaaatagtggatggtggaacac 1552304  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 1559113 - 1559056
Alignment:
Q  194 tgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacac 251  Q
    |||||||||||||||||||||||||| ||| ||||   |||| |||||||||| ||||    
T  1559113 tgacatctcaacttcaaatggaagcaaatgctatatcgaatagtggatggtggaacac 1559056  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 1543052 - 1543000
Alignment:
Q  194 tgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtgg 246  Q
    |||||||||||||||||||||||||| ||| ||||   |||| ||||||||||    
T  1543052 tgacatctcaacttcaaatggaagcaaatgctatattgaatagtggatggtgg 1543000  T

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Target: scaffold0491 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 7923 - 7723
Alignment:
Q  91 atgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatctgggg 190  Q
    |||| ||||| |||||||||| || | ||||||  |  ||||||||||||| ||||||||||||||| ||| |||||| |   ||| |||| |||||       
T  7923 atgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca 7824  T
Q  191 caatgacatctcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacacttatggtggaggcttcaatatatccaatcgttgcaattg 290  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||| |||||||||| |||||| || || |  ||||||||| || |||||||| |||||    
T  7823 caatgacatctcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacacttctgatgcaaacttcaatatctctaatcgttgtaattg 7724  T
Q  291 g 291  Q
    |    
T  7723 g 7723  T

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Target: scaffold0491; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 3304 - 3131
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctt---acttggggtttgatcatggggactcg 182  Q
    |||| |||||||||| |||||||||| || | ||||||  |  ||||||||||||| ||||||||||||||   | ||| |||||| |   ||| ||||     
T  3304 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactca 3205  T
Q  183 atctggggcaatgacatc---tcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacactt 253  Q
    |||||   ||||||||||   ||||||||||||||||||| ||| ||||  ||||| |||||||||| ||||||    
T  3204 atctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacactt 3131  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 18751555 - 18751385
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatc 185  Q
    |||| |||||||||| |||||||||| || | ||||||  |  ||||||||||||| ||||||||||||||| ||| |||||| |   ||| |||| |||    
T  18751555 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc 18751456  T
Q  186 tggggcaatgacatc---tcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacactt 253  Q
    ||   ||||||||||   ||||||||||||||||||| ||| ||||  ||||| |||||||||| ||||||    
T  18751455 tgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacactt 18751385  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 18741498 - 18741325
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctt---acttggggtttgatcatggggactcg 182  Q
    |||| |||||||||| |||||||||| || | ||||||  |  ||||||||||||| ||||||||||||||   | ||| |||||| |   ||| ||||     
T  18741498 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactca 18741399  T
Q  183 atctggggcaatgacatc---tcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacactt 253  Q
    |||||   ||||||||||   ||||||||||||||||||| ||| ||||  ||||| |||||||||| ||||||    
T  18741398 atctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacactt 18741325  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 18746462 - 18746289
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctt---acttggggtttgatcatggggactcg 182  Q
    |||| |||||||||| |||||||||| || | ||||||  |  ||||||||||||| ||||||||||||||   | ||| |||||| |   ||| ||||     
T  18746462 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttataatttgtggtttggttgagggaactca 18746363  T
Q  183 atctggggcaatgacatc---tcaacttcaaatggaagcagatgttatacaaaataatggatggtggtacactt 253  Q
    |||||   ||||||||||   ||||||||||||||||||| ||| ||||  ||||| |||||||||| ||||||    
T  18746362 atctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacactt 18746289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 18755669 - 18755533
Alignment:
Q  86 aaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttcttacttggggtttgatcatggggactcgatc 185  Q
    |||||| ||||||||||||||||||| || | ||||||| |  |||||| ||||||   | ||||||||||| ||||||| |||||  ||| |||| |||    
T  18755669 aaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttatttggggtgtgatcgagggaactcaatc 18755570  T
Q  186 ---tggggcaatgacatctcaacttcaaatggaagca 219  Q
       ||   ||||||||| |||| ||||||||||||||    
T  18755569 ttttgctacaatgacatatcaatttcaaatggaagca 18755533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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