View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9356-LTR4-TNT-insertion-10 (Length: 259)
Name: F9356-LTR4-TNT-insertion-10
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9356-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13403098 - 13403341
Alignment:
| Q |
8 |
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13403098 |
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac |
13403197 |
T |
|
| Q |
108 |
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactagtacnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13403198 |
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagtgtatacaactagtactt |
13403297 |
T |
|
| Q |
208 |
nnnnnaactattatttaatttatctttgtggcagatatatatta |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13403298 |
tttttaactattatttaatttatctttgtggcagatatatatta |
13403341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 20929278 - 20929034
Alignment:
| Q |
8 |
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||| |||| | || |||||||||||||| |
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| T |
20929278 |
attcctatgaacaagaaggtggattcagaagagggtgcagaaaattcaattgttcaacaagttccaccattaaatcattatgagtttgatatcatgaaac |
20929179 |
T |
|
| Q |
108 |
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactag-tacn |
206 |
Q |
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|||| |||||| |||||||||||||||| ||||||||||||||| |||| |||||| | |||||| ||||||| ||| || |||||||||||| | |
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| T |
20929178 |
cgaccatctcaggtttcaaaaaacagatggacgtaagtaatcactctaagcatgcatctttttgttaattactttttcatagtgtatacaactagcaatt |
20929079 |
T |
|
| Q |
207 |
nnnnnnaactattatttaatttatctttgtggcagatatatatta |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
20929078 |
ttttttaactattatttaatttatctttgtggcagatatatatta |
20929034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 20916960 - 20916781
Alignment:
| Q |
8 |
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |
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| T |
20916960 |
attcctatgaacaagaaggtggatccagaagagggtgcagaaaattcaattgttcaacaagttccaccaataaattattatgagtcggatatcatgaaac |
20916861 |
T |
|
| Q |
108 |
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcac |
187 |
Q |
| |
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| T |
20916860 |
caacaatcacaattttcaaaaaacaaatggatgtaagtaatcactctaagtattcaactcgttgttaattactttatcac |
20916781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 20914094 - 20914324
Alignment:
| Q |
14 |
atgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgacta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| | ||| |||||||||||| | |||| |
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| T |
20914094 |
atgaacaagaaggtggatctagaagagggtgcagaaaattcaattgttc---------caccaataaattattatgagtcagatatcatgaaagcaacta |
20914184 |
T |
|
| Q |
114 |
tctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactag--tacnnnnnn |
211 |
Q |
| |
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|| || |||||||||| || ||| | ||||||||||||| ||||||||||| ||||||||| ||||||||||| || |||||||| ||| ||| |
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| T |
20914185 |
tcacaactttcaaaaaccaaatggatgtaagtaatcactctaagtatgcatctcgttgttaattactttatcatagtgtatacaattagaatactttttt |
20914284 |
T |
|
| Q |
212 |
naactattatttaatttatctttgtggcagatatatatta |
251 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
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| T |
20914285 |
aaactattatttaatttatctctgtggcagatatatatta |
20914324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 20943866 - 20943680
Alignment:
| Q |
68 |
gttccacaaataaattattacgtgtctgatatcatgaaaccgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttc |
167 |
Q |
| |
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||||||| |||||||||||| | ||| |||||||||| | | |||| | || ||||||||||||| ||| | ||||||||||| | ||||||||||| || |
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| T |
20943866 |
gttccaccaataaattattatgagtcagatatcatgatagcaactaccgcaactttcaaaaaacaaatggatgtaagtaatcagtctaagtatgcatctc |
20943767 |
T |
|
| Q |
168 |
gttgttatttactttatcacagcgtatacaactagta---cnnnnnnnaactattatttaatttatctttgtggcagatatatatta |
251 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||| | |||||||||||||||||||||||| ||| |||||||||| |
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| T |
20943766 |
gttgttaattactttatcatagtgtatacaattagaatatgtttttttaactattatttaatttatctttgttgcaaatatatatta |
20943680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 20916755 - 20916717
Alignment:
| Q |
213 |
aactattatttaatttatctttgtggcagatatatatta |
251 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||| |
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| T |
20916755 |
aactattatttaagttatctttgtggcagacatatatta |
20916717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 8388390 - 8388285
Alignment:
| Q |
25 |
ggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgactatctcatctttc |
124 |
Q |
| |
|
|||||||| | |||||||| || ||||||||||||||||||| ||||| ||| |||||||| | ||| ||| |||||||| |||||| || | ||| |
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| T |
8388390 |
ggtggatccataagagggtacatctaattcaattgttcaacaagctccaccaatgaattattatgagtcggatcccatgaaactaactatcacaacattc |
8388291 |
T |
|
| Q |
125 |
aaaaaa |
130 |
Q |
| |
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|||||| |
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|
| T |
8388290 |
aaaaaa |
8388285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 8389112 - 8389149
Alignment:
| Q |
50 |
aattcaattgttcaacaagttccacaaataaattatta |
87 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |
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|
| T |
8389112 |
aattcagttgttcaacaagctccacaaataaattatta |
8389149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 42978733 - 42978613
Alignment:
| Q |
12 |
ctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgac |
111 |
Q |
| |
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|||| |||||| |||||||| |||||||||| | ||||||||| ||||||||| || || ||| |||||||| | ||| ||| ||||||||| || |
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| T |
42978733 |
ctatcaacaagttggtggatccagaagagggtagatctaattcaattattcaacaagctctactaatgaattattatgagtcggatcgcatgaaaccaac |
42978634 |
T |
|
| Q |
112 |
tatctcatctttcaaaaaaca |
132 |
Q |
| |
|
|||| || | ||||||||||| |
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|
| T |
42978633 |
tatcacagcattcaaaaaaca |
42978613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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