View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9356-LTR4-TNT-insertion-10 (Length: 259)
Name: F9356-LTR4-TNT-insertion-10
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9356-LTR4-TNT-insertion-10
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13403098 - 13403341
Alignment:
Q
8
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13403098
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac
13403197
T
Q
108
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactagtacnn
207
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
13403198
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagtgtatacaactagtactt
13403297
T
Q
208
nnnnnaactattatttaatttatctttgtggcagatatatatta
251
Q
|||||||||||||||||||||||||||||||||||||||
T
13403298
tttttaactattatttaatttatctttgtggcagatatatatta
13403341
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 20929278 - 20929034
Alignment:
Q
8
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac
107
Q
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||| |||| | || ||||||||||||||
T
20929278
attcctatgaacaagaaggtggattcagaagagggtgcagaaaattcaattgttcaacaagttccaccattaaatcattatgagtttgatatcatgaaac
20929179
T
Q
108
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactag-tacn
206
Q
|||| |||||| |||||||||||||||| ||||||||||||||| |||| |||||| | |||||| ||||||| ||| || |||||||||||| |
T
20929178
cgaccatctcaggtttcaaaaaacagatggacgtaagtaatcactctaagcatgcatctttttgttaattactttttcatagtgtatacaactagcaatt
20929079
T
Q
207
nnnnnnaactattatttaatttatctttgtggcagatatatatta
251
Q
|||||||||||||||||||||||||||||||||||||||
T
20929078
ttttttaactattatttaatttatctttgtggcagatatatatta
20929034
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 20916960 - 20916781
Alignment:
Q
8
attcctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaac
107
Q
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||
T
20916960
attcctatgaacaagaaggtggatccagaagagggtgcagaaaattcaattgttcaacaagttccaccaataaattattatgagtcggatatcatgaaac
20916861
T
Q
108
cgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcac
187
Q
| || ||| || |||||||||||| ||| | ||||||||||||| ||||||| || ||||||||| ||||||||||||
T
20916860
caacaatcacaattttcaaaaaacaaatggatgtaagtaatcactctaagtattcaactcgttgttaattactttatcac
20916781
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 20914094 - 20914324
Alignment:
Q
14
atgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgacta
113
Q
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| | ||| |||||||||||| | ||||
T
20914094
atgaacaagaaggtggatctagaagagggtgcagaaaattcaattgttc---------caccaataaattattatgagtcagatatcatgaaagcaacta
20914184
T
Q
114
tctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttcgttgttatttactttatcacagcgtatacaactag--tacnnnnnn
211
Q
|| || |||||||||| || ||| | ||||||||||||| ||||||||||| ||||||||| ||||||||||| || |||||||| ||| |||
T
20914185
tcacaactttcaaaaaccaaatggatgtaagtaatcactctaagtatgcatctcgttgttaattactttatcatagtgtatacaattagaatactttttt
20914284
T
Q
212
naactattatttaatttatctttgtggcagatatatatta
251
Q
|||||||||||||||||||| ||||||||||||||||||
T
20914285
aaactattatttaatttatctctgtggcagatatatatta
20914324
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 20943866 - 20943680
Alignment:
Q
68
gttccacaaataaattattacgtgtctgatatcatgaaaccgactatctcatctttcaaaaaacagatgaacgtaagtaatcactttaagtatgcatttc
167
Q
||||||| |||||||||||| | ||| |||||||||| | | |||| | || ||||||||||||| ||| | ||||||||||| | ||||||||||| ||
T
20943866
gttccaccaataaattattatgagtcagatatcatgatagcaactaccgcaactttcaaaaaacaaatggatgtaagtaatcagtctaagtatgcatctc
20943767
T
Q
168
gttgttatttactttatcacagcgtatacaactagta---cnnnnnnnaactattatttaatttatctttgtggcagatatatatta
251
Q
||||||| ||||||||||| || |||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||
T
20943766
gttgttaattactttatcatagtgtatacaattagaatatgtttttttaactattatttaatttatctttgttgcaaatatatatta
20943680
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 20916755 - 20916717
Alignment:
Q
213
aactattatttaatttatctttgtggcagatatatatta
251
Q
||||||||||||| |||||||||||||||| ||||||||
T
20916755
aactattatttaagttatctttgtggcagacatatatta
20916717
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 8388390 - 8388285
Alignment:
Q
25
ggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgactatctcatctttc
124
Q
|||||||| | |||||||| || ||||||||||||||||||| ||||| ||| |||||||| | ||| ||| |||||||| |||||| || | |||
T
8388390
ggtggatccataagagggtacatctaattcaattgttcaacaagctccaccaatgaattattatgagtcggatcccatgaaactaactatcacaacattc
8388291
T
Q
125
aaaaaa
130
Q
||||||
T
8388290
aaaaaa
8388285
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 8389112 - 8389149
Alignment:
Q
50
aattcaattgttcaacaagttccacaaataaattatta
87
Q
|||||| |||||||||||| ||||||||||||||||||
T
8389112
aattcagttgttcaacaagctccacaaataaattatta
8389149
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 42978733 - 42978613
Alignment:
Q
12
ctatgaacaagaaggtggatctagaagagggtgcaaaaaattcaattgttcaacaagttccacaaataaattattacgtgtctgatatcatgaaaccgac
111
Q
|||| |||||| |||||||| |||||||||| | ||||||||| ||||||||| || || ||| |||||||| | ||| ||| ||||||||| ||
T
42978733
ctatcaacaagttggtggatccagaagagggtagatctaattcaattattcaacaagctctactaatgaattattatgagtcggatcgcatgaaaccaac
42978634
T
Q
112
tatctcatctttcaaaaaaca
132
Q
|||| || | |||||||||||
T
42978633
tatcacagcattcaaaaaaca
42978613
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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