View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9356-LTR4-TNT-insertion-5 (Length: 79)
Name: F9356-LTR4-TNT-insertion-5
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9356-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-30
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 49134204 - 49134269
Alignment:
| Q |
7 |
aataatgtctgaggtatgtgtcatttggttttgtggcttttgtagtgcaactcttatgaacaattg |
72 |
Q |
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| T |
49134204 |
aataatgtctgaggtatgtgtcatttggttttgtggcttttgtagtgcaactcttatgaacaattg |
49134269 |
T |
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