View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9356-LTR4-TNT-insertion-7 (Length: 357)
Name: F9356-LTR4-TNT-insertion-7
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9356-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 34922682 - 34922343
Alignment:
| Q |
8 |
atgaaggcatagacgagagagggtatgatatgatgtgttaggctgttagctaggtgtttgtttttcttgcttacaaaacaagagtctctattgacggttt |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922682 |
atgaaagcatagacgagagagggtatgatatgatgtgttaggctgttagctaggtgtttgtttttcttgcttacaaaacaagagtctctattgacggttt |
34922583 |
T |
|
| Q |
108 |
tgtgaacctcatggtcctacatatttcatctcaaggtaaacactttacctaatttatgagcactaacgaacaagtgtcctatcaaagctttgcatcatct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922582 |
tgtgaacctcatggtcctacatatttcatctcaaggtaaacactttacctaatttatgagcactaacgaacaagtgtcctatcaaagctttgcatcatct |
34922483 |
T |
|
| Q |
208 |
cttgctttcaataatggcacaatgatattagtacattgaaggccctttttatctacacaacttgtcctatgtggttcaagatgccttaattagatgttag |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922482 |
cttgctttcaataatggcacaatgatattagtacattgaaagccctttttatctacacaacttgtcctatgtggttcaagatgccttaattagatgttag |
34922383 |
T |
|
| Q |
308 |
gccattcaatttcatggttaaggtttgagaatgttaatta |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34922382 |
gccattcaatttcatggttaaggtttgagaatgttaatta |
34922343 |
T |
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