View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9356-LTR4-TNT-insertion-8 (Length: 385)
Name: F9356-LTR4-TNT-insertion-8
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9356-LTR4-TNT-insertion-8 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 3003834 - 3003691
Alignment:
| Q |
8 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
107 |
Q |
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| T |
3003834 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
3003735 |
T |
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| Q |
108 |
accacaaagttgtctcgttagggtgattttggcatgttccaagg |
151 |
Q |
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| T |
3003734 |
accacaaagttgtctcgttagggtgattttggcatgttccaagg |
3003691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 248 - 376
Target Start/End: Complemental strand, 3003594 - 3003466
Alignment:
| Q |
248 |
taatgtcgttgcattcttgtattgaagatttaggggatgtccttttcacttcttgtactatttgaaagtttgagggcaacattccgcctaatgatcatca |
347 |
Q |
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| T |
3003594 |
taatgtcgttgcattcttgtattgaagatttaggggatgtccttttcacttcttgtactatttgaaagtttgagggcaacattccgcctaatgatcatca |
3003495 |
T |
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| Q |
348 |
tgaaaccacatagtaagttttatcaattg |
376 |
Q |
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| T |
3003494 |
tgaaaccacatagtaagttttatcaattg |
3003466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 2570442 - 2570308
Alignment:
| Q |
8 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
107 |
Q |
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| T |
2570442 |
aattcttcatccattgtccca---tttcgcctcactaaaacgttcgtagtgactatacctcaagaaatcatgttgacatccttgtaaaaagtatagcatg |
2570346 |
T |
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| Q |
108 |
accacaaagttgtctcgttagggtgattttggcatgtt |
145 |
Q |
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| T |
2570345 |
accacaaagttgtctagtttggatgattttggcatgtt |
2570308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 37087018 - 37086971
Alignment:
| Q |
91 |
gtaaaaaatatagcatgaccacaaagttgtctcgttagggtgattttg |
138 |
Q |
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| T |
37087018 |
gtaaaaaatatagcatgacaacaaagttgtttggttaggatgattttg |
37086971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 12582 - 12686
Alignment:
| Q |
8 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
107 |
Q |
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| T |
12582 |
aattcttcatcccttgttcca---tttcacttcactgaaatgtcagtagtgactattccccaagaaatcactttgataatcttgtacaaagtataacatg |
12678 |
T |
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| Q |
108 |
accacaaa |
115 |
Q |
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| T |
12679 |
accacaaa |
12686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 6623158 - 6623262
Alignment:
| Q |
8 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
107 |
Q |
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| T |
6623158 |
aattcttcatcccttgttcca---tttcacttcactgaaatgtcagtagtgactattccccaagaaatcactttgataatcttgtacaaagtataacatg |
6623254 |
T |
|
| Q |
108 |
accacaaa |
115 |
Q |
| |
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|||||||| |
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| T |
6623255 |
accacaaa |
6623262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 6789923 - 6790033
Alignment:
| Q |
8 |
aattcttcatcccttgtcccaccatttcatctcactgaaacgtccatagtgactatacctcaagaaatcattttaatatcctcgtaaaaaatatagcatg |
107 |
Q |
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||||||||||||||||| ||| ||||| ||||||||| ||| |||||||||| || |||||||||| ||| ||| || ||| ||| |||| ||| |
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| T |
6789923 |
aattcttcatcccttgttcca---tttcacttcactgaaatgtctgtagtgactattccccaagaaatcactttgataatcttgtacaaagtatat-atg |
6790018 |
T |
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| Q |
108 |
accacaaagttgtct |
122 |
Q |
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| T |
6790019 |
accacaaagttgtct |
6790033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 42448575 - 42448507
Alignment:
| Q |
54 |
tagtgactatacctcaagaaatcattttaatatcctcgtaaaaa-atatagcatgaccacaaagttgtc |
121 |
Q |
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||||||||||||| |||||||||| ||||||| || ||||||| |||| ||| || |||||||||||| |
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| T |
42448575 |
tagtgactataccccaagaaatcactttaataatcttgtaaaaacatattgcacgatcacaaagttgtc |
42448507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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