View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9356-LTR4-TNT-insertion-9 (Length: 139)
Name: F9356-LTR4-TNT-insertion-9
Description: F9356-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9356-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 21185579 - 21185497
Alignment:
| Q |
9 |
catgagtataaacatatgggttggtgtcgtgttgaagcaagggtctcattgccttacgctttagagttacttatcgctctctc |
91 |
Q |
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| T |
21185579 |
catgagtataaacatatgggttggtgtcgtgttgaagcaagggtctcattgccttacgctttagagttacttatcgctctctc |
21185497 |
T |
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