View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-1 (Length: 485)
Name: F9359-LTR4-TNT-insertion-1
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 34675222 - 34675688
Alignment:
| Q |
9 |
ctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675222 |
ctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttc |
34675321 |
T |
|
| Q |
109 |
ggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675322 |
ggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagag |
34675421 |
T |
|
| Q |
209 |
atcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675422 |
atcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgctt |
34675521 |
T |
|
| Q |
309 |
tgcttacaatgaaatctctccgaattcctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagtttagttcaaga |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675522 |
tgcttacaatgaaatctctccgaattcctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagtttagttcaaga |
34675621 |
T |
|
| Q |
409 |
tttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggatta |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675622 |
tttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggatta |
34675688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 33246367 - 33246317
Alignment:
| Q |
181 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
231 |
Q |
| |
|
||||||||||| || || ||| ||||||||||||||||||||||||||||| |
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| T |
33246367 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
33246317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 307
Target Start/End: Original strand, 43583228 - 43583509
Alignment:
| Q |
26 |
gaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcac |
125 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||||||||||||||| ||||| || || || || ||||| ||||| |
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| T |
43583228 |
gaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcac |
43583327 |
T |
|
| Q |
126 |
aaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgt |
225 |
Q |
| |
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|||| | ||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||||||||||| ||||| || || ||||| |||||||| ||| |
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| T |
43583328 |
aaagcttctcaatgaacttctccctcaccaaagggaggatgctgtgaactcccttgcttatgaagccgaagcacgagttagggatccagtttatggatgt |
43583427 |
T |
|
| Q |
226 |
gttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgct |
307 |
Q |
| |
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|| || || |||||||| || || ||||||||||| || |||||||||||||| || ||||||| ||||||||||||||| |
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| T |
43583428 |
gtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgctaacaccgatcttcttcgct |
43583509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 282
Target Start/End: Complemental strand, 12360861 - 12360610
Alignment:
| Q |
31 |
tgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaaga |
130 |
Q |
| |
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|||||||||| ||||| ||||| ||||| || ||||| |||||||| |||||||||||||| |||||||| || || || |||||||| || | || |
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| T |
12360861 |
tgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaatgtaagtaaac |
12360762 |
T |
|
| Q |
131 |
tcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttgg |
230 |
Q |
| |
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| || || ||| | | || || || || |||||||||||||| || |||||||||||||| |||||| | | | |||||| ||||||||||| || || |
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| T |
12360761 |
ttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagctgaggcaaggataaaagatccagtttatggttgcgtcgg |
12360662 |
T |
|
| Q |
231 |
tgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgat |
282 |
Q |
| |
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||| || || |||| || ||||||||| || || ||||||||||||||| |
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| T |
12360661 |
tgccatttcagtcctccaaagacaagttattaggctccaaaaggaacttgat |
12360610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 15262643 - 15262826
Alignment:
| Q |
49 |
tttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctcc |
148 |
Q |
| |
|
|||||||| || |||||||| || | || |||||||||||||| ||||| | || || || |||||||| || |||||| | ||||| || | | || |
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| T |
15262643 |
tttgcaccttattttccacctgatcagccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacacc |
15262742 |
T |
|
| Q |
149 |
ctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtg |
232 |
Q |
| |
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||||||| | |||||||| |||||||| |||||||||||||| ||| || | ||||||||||||||||||||||||||| |
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| T |
15262743 |
ctcaccaacgtgaagatgctgtgaattcacttgcttatgaagctgagatgcgacttcgagatcctgtttatggttgtgttggtg |
15262826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 297
Target Start/End: Original strand, 591287 - 591427
Alignment:
| Q |
157 |
agagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaag |
256 |
Q |
| |
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||||||||| | |||||||| || ||||||||||| || ||| | | | |||||| || |||||||||||||| ||||| ||| | ||||| |||||| |
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| T |
591287 |
agagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgtgcttcaaagacaac |
591386 |
T |
|
| Q |
257 |
ttcagagacttcaaaaggaacttgattctgctaatgccgat |
297 |
Q |
| |
|
| | | |||||||||||||| ||| || | ||||||||| |
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|
| T |
591387 |
tccttaagcttcaaaaggaactcgatgctacaaatgccgat |
591427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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