View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9359-LTR4-TNT-insertion-11 (Length: 119)

Name: F9359-LTR4-TNT-insertion-11
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9359-LTR4-TNT-insertion-11
F9359-LTR4-TNT-insertion-11
[»] chr2 (7 HSPs)
chr2 (8-110)||(8412183-8412285)
chr2 (8-110)||(8434281-8434383)
chr2 (8-110)||(8375721-8375823)
chr2 (8-107)||(8439280-8439379)
chr2 (25-106)||(8417415-8417496)
chr2 (25-107)||(8395410-8395492)
chr2 (25-107)||(8406080-8406162)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8412183 - 8412285
Alignment:
Q  8 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412183 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 8412282  T
Q  108 ttg 110  Q
    |||    
T  8412283 ttg 8412285  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8434281 - 8434383
Alignment:
Q  8 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434281 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 8434380  T
Q  108 ttg 110  Q
    |||    
T  8434381 ttg 8434383  T

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Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 8375823 - 8375721
Alignment:
Q  8 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8375823 tttaccttttttgacataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 8375724  T
Q  108 ttg 110  Q
    |||    
T  8375723 ttg 8375721  T

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Target: chr2; HSP #4
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 8439280 - 8439379
Alignment:
Q  8 tttacctttttggaaataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8439280 tttaccttttttgacataggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 8439379  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 8417415 - 8417496
Alignment:
Q  25 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatca 106  Q
    ||||||||||||||||||  ||||||| | |||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  8417415 aggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatca 8417496  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 8395492 - 8395410
Alignment:
Q  25 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaa 8395410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 8406080 - 8406162
Alignment:
Q  25 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaa 107  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaa 8406162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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