View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-13 (Length: 494)
Name: F9359-LTR4-TNT-insertion-13
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-13 |
 | |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Original strand, 325002 - 325448
Alignment:
| Q |
10 |
aatcctgaagtcgagagcgatagctcagaagaaataggtctttttggctgcgggacaagtgaggaagacagtgatattgactatccaaaatatactttgc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325002 |
aatcctgaagtcgagagcgatagctcagaagaaataggtctttttggctgcgggacaagtgaggaagacagtgatattgactatccaaaatatactttgc |
325101 |
T |
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| Q |
110 |
gcgacaagtttgatattcgtaataatggagcttttgctagtgatgtgagtgatatgagtgactttgatgacttcgattgcattgggaaacattacagcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325102 |
gcgacaagtttgatattcgtaataatggagcttttgctagtgatgtgagtgatatgagtgactttgatgacttcgattgcattgggaaacattacagcaa |
325201 |
T |
|
| Q |
210 |
agaatttgatgagaatggcagaaaattcggtcataacctagaagttgattatagaaggcattatgtgtgttagtgggttttgatatccgtgttgcttgac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325202 |
agaatttgatgagaatggcagaaaattcggtcataacctagaagttgattatagaaggcattatgtgtgttagtgggttttgatatccgtgttgcttgac |
325301 |
T |
|
| Q |
310 |
attttgaaacattctttgcaaactaacgtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttttaaccattgatatattt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325302 |
attttgaaacattctttgcaaactaacgtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttttaaccattgatatattt |
325401 |
T |
|
| Q |
410 |
atataatattgagtggttaagatgaaggaagggatactgttaaacac |
456 |
Q |
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| T |
325402 |
atataatattgagtggttaagatgaaggaagggatactgttaaacac |
325448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 34852591 - 34852668
Alignment:
| Q |
370 |
ccaccatagaaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatgaaggaagggatact |
447 |
Q |
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||||||| | ||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
34852591 |
ccaccatgggaaagttacatttttagccattgatatattcatataatattgagtggttaaaataaaggaagggatact |
34852668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 325696 - 325657
Alignment:
| Q |
337 |
gtggcatttaacatgggacacttgaaaatcttcccaccat |
376 |
Q |
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| T |
325696 |
gtggcatttaacatgggacatttgaaaaccttcccaccat |
325657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 337 - 446
Target Start/End: Original strand, 3827 - 3936
Alignment:
| Q |
337 |
gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatgaag |
436 |
Q |
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||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3827 |
gtggcatttcacatgggacacttgaaaatcttcccaccatgggaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatgaag |
3926 |
T |
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| Q |
437 |
gaagggatac |
446 |
Q |
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|||||||||| |
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| T |
3927 |
gaagggatac |
3936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 31912325 - 31912253
Alignment:
| Q |
375 |
atagaaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatgaaggaagggatact |
447 |
Q |
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|||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
31912325 |
ataggaaagttacatttttagccattgatatattcatataatattgagtggttaagatgatggaagggatact |
31912253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 50656958 - 50657005
Alignment:
| Q |
337 |
gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagt |
384 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||| ||||||| |
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| T |
50656958 |
gtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagt |
50657005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 3148194 - 3148241
Alignment:
| Q |
337 |
gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagt |
384 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||| ||||||| |
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| T |
3148194 |
gtggcatttaacacgggacacttgaaaatcttcccatcatggaaaagt |
3148241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Original strand, 35214589 - 35214624
Alignment:
| Q |
341 |
catttaacatgggacacttgaaaatcttcccaccat |
376 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |
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| T |
35214589 |
catttaacatgagacacttgaaaatcttcccaccat |
35214624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 35215390 - 35215347
Alignment:
| Q |
341 |
catttaacatgggacacttgaaaatcttcccaccatagaaaagt |
384 |
Q |
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||||||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
35215390 |
catttaacatgagacacttgaaaatattcccaccataggaaagt |
35215347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 42423274 - 42423235
Alignment:
| Q |
337 |
gtggcatttaacatgggacacttgaaaatcttcccaccat |
376 |
Q |
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||||||||| ||||| |||||||||||||||||||||||| |
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| T |
42423274 |
gtggcatttcacatgagacacttgaaaatcttcccaccat |
42423235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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