View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9359-LTR4-TNT-insertion-14 (Length: 294)

Name: F9359-LTR4-TNT-insertion-14
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9359-LTR4-TNT-insertion-14
F9359-LTR4-TNT-insertion-14
[»] chr8 (2 HSPs)
chr8 (186-284)||(7094645-7094743)
chr8 (186-284)||(7098378-7098476)
[»] chr5 (2 HSPs)
chr5 (186-284)||(37627894-37627992)
chr5 (186-284)||(37807017-37807121)
[»] chr3 (2 HSPs)
chr3 (186-284)||(8377058-8377156)
chr3 (186-251)||(11035898-11035963)
[»] chr1 (2 HSPs)
chr1 (186-284)||(22362285-22362383)
chr1 (186-281)||(41314762-41314857)
[»] chr7 (5 HSPs)
chr7 (195-285)||(19633419-19633509)
chr7 (186-284)||(1609329-1609431)
chr7 (8-85)||(1609532-1609609)
chr7 (186-284)||(2186619-2186721)
chr7 (186-261)||(21270495-21270567)
[»] scaffold0627 (1 HSPs)
scaffold0627 (186-250)||(3342-3406)
[»] chr2 (1 HSPs)
chr2 (186-234)||(19214968-19215016)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 7094743 - 7094645
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaatt 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7094743 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatt 7094645  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 7098476 - 7098378
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaatt 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7098476 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatt 7098378  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 37627992 - 37627894
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaatt 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  37627992 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatt 37627894  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 37807121 - 37807017
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactattt------ttatgtgtgcacgtgta 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||      |||||||||||||||||    
T  37807121 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtaacctataactatttattcctactatttttatttttatgtgtgcacgtgta 37807022  T
Q  280 gaatt 284  Q
    |||||    
T  37807021 gaatt 37807017  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 8377058 - 8377156
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaatt 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  8377058 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatt 8377156  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 11035963 - 11035898
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttat 251  Q
    ||||| || |||||||||||||| ||||| | ||||||||| |||||||| ||  |||||||||||    
T  11035963 ctttcaaattatatagccaaaatccattagactaattattatatagtgtatcctataactatttat 11035898  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 22362285 - 22362383
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaatt 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  22362285 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatt 22362383  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 41314857 - 41314762
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtaga 281  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41314857 ctttcaaagtatatagccaaaattcattatattaattattaaatggggtaccctataactatttattcctactatttttatgtgtgcacgtgtaga 41314762  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 19633509 - 19633419
Alignment:
Q  195 tatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatttttatgtgtgcacgtgtagaattg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  19633509 tatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattg 19633419  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 1609431 - 1609329
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtaccc----agtaactatttattcctactatttttatgtgtgcacgtgtaga 281  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||||||||    
T  1609431 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtaga 1609332  T
Q  282 att 284  Q
    |||    
T  1609331 att 1609329  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 1609609 - 1609532
Alignment:
Q  8 aatgttaggttcaccttctgtcaaaatcataatgggatgatgatcagactgcacacgagggagaatgtaagatcccgg 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1609609 aatgttaggttcaccttctgtcaaaatcataatgggatgatgatcagactgcacacgagggagaatgtaagatcccgg 1609532  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 2186619 - 2186721
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtaccc----agtaactatttattcctactatttttatgtgtgcacgtgtaga 281  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||||| ||    
T  2186619 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtgga 2186718  T
Q  282 att 284  Q
    |||    
T  2186719 att 2186721  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 21270567 - 21270495
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactatttattcctactatt 261  Q
    ||||| ||||||||||||||||| ||||| |   ||||||||||| |||||||  ||||||||||| |||| ||||    
T  21270567 ctttcaaagtatatagccaaaatccattaca---attattaaataatgtaccctataactatttatgcctattatt 21270495  T

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Target: scaffold0627 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 3406 - 3342
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtacccagtaactattta 250  Q
    |||| ||| |||||||||||||| ||||||| ||||||||||||||||||||   ||||||||||    
T  3406 ctttggaattatatagccaaaatccattatactaattattaaatagtgtaccttataactattta 3342  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 19214968 - 19215016
Alignment:
Q  186 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgt 234  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||    
T  19214968 ctttcaaattatatagccaaaattcattatactaattattaaatagtgt 19215016  T

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