View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-2 (Length: 529)
Name: F9359-LTR4-TNT-insertion-2
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 502
Target Start/End: Original strand, 39277744 - 39278239
Alignment:
| Q |
7 |
acttatcacatttttctcatacaaacaaagaaaaatattcatgtgtaattcaaatggtgattgcagaccattgggctttctgctgggtctcccctttgcc |
106 |
Q |
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| T |
39277744 |
acttatcacatttttctcatacaaacaaagaaaaatattcatgtgtaattcaaatggtgattgcagaccattgggctttctgctgggtctcccctttgcc |
39277843 |
T |
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| Q |
107 |
tttctctgcctccttatctcaatcattggtcttattgtttggatcgttgggtaacatattcatcaatcattttctatgatcatttcttttgtggtatctt |
206 |
Q |
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| T |
39277844 |
tttctctgcctccttatctcaatcattggtcttattgtttggatcgttgggtaacatattcatcaatcattttctatgatcatttcttttgtggtatctt |
39277943 |
T |
|
| Q |
207 |
taccatgtgaatagaatatgtgatttcttattctgtgatatgagtttgattttgattgaatgaaaatatcaaaaagactaaaactttactacataatatt |
306 |
Q |
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| T |
39277944 |
taccatgtgaatagaatatgtgatttcttattctgtgatatgagtttgattttgattgaatgaaaatatcaaaaagactaaaactttactacataatatt |
39278043 |
T |
|
| Q |
307 |
tgcaggttgacactgacatgcatatgcccctgctgtttgtgcttgacagtaattgtggaacttgccttggaattggttaaggctcctcttcatgttatgg |
406 |
Q |
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| T |
39278044 |
tgcaggttgacactgacatgcatatgcccctgctgtttgtgcttgacagtaattgtggaacttgctttggaattggttaaggctcctcttcatgttatgg |
39278143 |
T |
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| Q |
407 |
aatggttcacctctaagattccatgttgatgttagagattcttttactttaccaattgtatcacatagagttctctagacttgtgaattgggatta |
502 |
Q |
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| T |
39278144 |
aatggttcacctctaagattccatgttgatgttagagattcttttactttaccaattgtatcacatagagttctctagacttgtgaattgggatta |
39278239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 30831228 - 30831317
Alignment:
| Q |
47 |
atgtgtaattcaaatggtgattgcagaccattgggctttctgctgggtctcccctttgcctttctctgcctccttatctcaatcattggt |
136 |
Q |
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| T |
30831228 |
atgtgcaattcagaaggtgaatgcagaccattgggttttctattaggtcttcctttcgcctttctctgtctcctcatctcaatcgttggt |
30831317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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