View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-4 (Length: 305)
Name: F9359-LTR4-TNT-insertion-4
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 27521991 - 27522276
Alignment:
| Q |
10 |
ataattaagcttacagtacactattagcgtcttcaaaatagggaaactacaaaacatagagccaaatatatatattgataataccatccacctttaataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521991 |
ataattaagcttacagtacactattagcgtcttcaaaatagggaaactacaaaacatagagccaaatatatatattgataataccatccacctttaataa |
27522090 |
T |
|
| Q |
110 |
ggttttcatcaaaagcatccaagatggcaggtatacaatggttccagggtaaggtcaagttcattcctccccatttctggtgcttcctcacggtaattgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522091 |
ggttttcatcaaaagcatccaagatggcaggtatacaatggttccagggtaaggtcaagttcattcctccccatttctggtgcttcctcacggtaattgc |
27522190 |
T |
|
| Q |
210 |
cactgcaaatatannnnnnnnactatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaatta |
295 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522191 |
cactgcaaatatattttttttactatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgacataatttaatta |
27522276 |
T |
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