View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9359-LTR4-TNT-insertion-5 (Length: 59)
Name: F9359-LTR4-TNT-insertion-5
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 43; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 893917 - 893959
Alignment:
| Q |
9 |
caacgacatcaataaatcacatgtaattcccgcaaataaatta |
51 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893917 |
caacgacatcaataaatcacatgtaattcccgcaaataaatta |
893959 |
T |
|
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