View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9359-LTR4-TNT-insertion-7 (Length: 212)
Name: F9359-LTR4-TNT-insertion-7
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9359-LTR4-TNT-insertion-7
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 18961519 - 18961713
Alignment:
Q
10
aaggcttttctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgcca
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
18961519
aaggcttttctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgcca
18961618
T
Q
110
ctattaaggacagcaatgtatgcttaaggttggaattttaaactttaatttttagtgttcaagtatacatacaatgtttaattagatagatatta
204
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
18961619
ctattaaggacagcaatgtatgcttaaggttggaattttaaactttaatttttagtgttcaagtatacatacaatgtttaattagatagatatta
18961713
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 18967169 - 18967291
Alignment:
Q
18
tctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgccactattaag
117
Q
||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||| || |||||||| ||||||||
T
18967169
tctggggatttggggatggatcaaccattcccgtatttgaaactcaaattggaaaaataggtgctgccatttgttgggaaaacaagatgccgctattaag
18967268
T
Q
118
gacagcaatgtatgcttaaggtt
140
Q
||||||||||||||| ||||||
T
18967269
aacagcaatgtatgctaaaggtt
18967291
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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