View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-7 (Length: 212)
Name: F9359-LTR4-TNT-insertion-7
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 18961519 - 18961713
Alignment:
| Q |
10 |
aaggcttttctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgcca |
109 |
Q |
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| T |
18961519 |
aaggcttttctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgcca |
18961618 |
T |
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| Q |
110 |
ctattaaggacagcaatgtatgcttaaggttggaattttaaactttaatttttagtgttcaagtatacatacaatgtttaattagatagatatta |
204 |
Q |
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| T |
18961619 |
ctattaaggacagcaatgtatgcttaaggttggaattttaaactttaatttttagtgttcaagtatacatacaatgtttaattagatagatatta |
18961713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 18967169 - 18967291
Alignment:
| Q |
18 |
tctggggatttggtgatggatcaaccattcaagtttttgaaactcaaattggaaaactaggtgctgtaatttgttgggagaataagatgccactattaag |
117 |
Q |
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| T |
18967169 |
tctggggatttggggatggatcaaccattcccgtatttgaaactcaaattggaaaaataggtgctgccatttgttgggaaaacaagatgccgctattaag |
18967268 |
T |
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| Q |
118 |
gacagcaatgtatgcttaaggtt |
140 |
Q |
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| T |
18967269 |
aacagcaatgtatgctaaaggtt |
18967291 |
T |
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