View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9359-LTR4-TNT-insertion-8 (Length: 123)
Name: F9359-LTR4-TNT-insertion-8
Description: F9359-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9359-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 3e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 3800897 - 3800794
Alignment:
| Q |
10 |
gtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800897 |
gtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtag |
3800798 |
T |
|
| Q |
110 |
aatt |
113 |
Q |
| |
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|||| |
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| T |
3800797 |
aatt |
3800794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 3789210 - 3789313
Alignment:
| Q |
10 |
gtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||| | |
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|
| T |
3789210 |
gtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtgg |
3789309 |
T |
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| Q |
110 |
aatt |
113 |
Q |
| |
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|||| |
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|
| T |
3789310 |
aatt |
3789313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 3767876 - 3767977
Alignment:
| Q |
12 |
cttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtagaa |
111 |
Q |
| |
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||||||||||||||||||||| || || || |||||||||| || |||||||||||| |||||||||| ||||| || |||||||||||| |||||| |
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| T |
3767876 |
cttccacacatcacaaatatatgacttgttcgtaaattgatcagttgcaaatggccaacataagaaaggtataccagaatatacaccttctatagtagaa |
3767975 |
T |
|
| Q |
112 |
tt |
113 |
Q |
| |
|
|| |
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|
| T |
3767976 |
tt |
3767977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 3780154 - 3780255
Alignment:
| Q |
12 |
cttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtagaa |
111 |
Q |
| |
|
||||||||||||||||| ||| || || || | |||||||||| | ||| ||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
3780154 |
cttccacacatcacaaacatatgacttgttcataaattgatcaccgtgaaacggccaacacaagaaaggtacaccgctatatacaccttctacggtagaa |
3780253 |
T |
|
| Q |
112 |
tt |
113 |
Q |
| |
|
|| |
|
|
| T |
3780254 |
tt |
3780255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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