View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9360-LTR4-TNT-insertion-1 (Length: 661)
Name: F9360-LTR4-TNT-insertion-1
Description: F9360-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9360-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 10 - 653
Target Start/End: Complemental strand, 42036782 - 42036139
Alignment:
| Q |
10 |
tggtactcaacaaggtaagaaagctatggctgatactaaaatatcatcaaaacaaaagaatctgaaggacaagaaagaaatgacaaaagctgatgttgac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036782 |
tggtactcaacaaggtaagaaagctatggctgatactaaaatatcatcaaaacaaaagaatctgaaggacaagaaagaaatgacaaaagctgatgttgac |
42036683 |
T |
|
| Q |
110 |
ttagcaaaaatgtttgttgattatgccactcctcgcaagctagcctgcaaaggcaagcgcgatgagattgaggaattaaagaggcgtcaaatggagctag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036682 |
ttagcaaaaatgtttgttgattatgccactcctcgcaagctagcctgcaaaggcaagcgcgatgagattgaggaattaaagaggcgtcaaatggagctag |
42036583 |
T |
|
| Q |
210 |
aggaagaatgtgccaacatcgacgcagatttgaagacaaaattaggccctttttatggatacaaagagccttcaataaatgagttgaggattgaggctta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036582 |
aggaagaatgtgccaacatcgacgcagatttgaagacaaaattaggccctttttatggatacaaagagccttcaataaatgagttgaggattgaggctta |
42036483 |
T |
|
| Q |
310 |
taagctttatgaggaggattgtacgttgaagaggatacttcccattcctaagcatgacgagatgggatttaagaaggcaatggagttgtttggcgaagtt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036482 |
taagctttatgaggaggattgtacgttgaagaggatacttcccattcctaagcatgacgagatgggatttaagaaggcaatggagttgtttggcgaagtt |
42036383 |
T |
|
| Q |
410 |
gtgaaggagcgtaagcttgtaagttacttgaatgatcctgttaggaaggagaacattgcaaactatctcaatgtttgtaagtttgtgcgaagtagtagta |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036382 |
gtgaaggagcgtaagcttgtaagttacttgaatgatcctgttaggaaggagaacattgcaaactatctcaatgtttgtaagtttgtgcgaagtagtagta |
42036283 |
T |
|
| Q |
510 |
atcaacttgaagaaaatgaggtgcatggtgggactgctaagaaaatgaaatctgaatttggaacggcgtaactatgagggagaaaatgaattccacagaa |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036282 |
atcaacttgaagaaaatgaggtgcatggtgggactgctaagaaaatgaaatctgaatttggaacggcgtaactatgagggagaaaatgaattccacagaa |
42036183 |
T |
|
| Q |
610 |
gtatgtttttatttagtaccgaatttctttaactttgtttatta |
653 |
Q |
| |
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| T |
42036182 |
gtatgtttttatttagtatcgaatttctttaactttgtttatta |
42036139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 35886386 - 35886531
Alignment:
| Q |
246 |
caaaattaggccctttttatggatacaaagagccttcaataaatgagttgaggattgaggcttataagctttatgaggaggattgtacgttgaagaggat |
345 |
Q |
| |
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|||| ||||| ||| ||||||||||| || ||||| | ||||||||||| ||||||||||||||| ||||| ||||||||||||| || ||| | || |
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| T |
35886386 |
caaagttaggtcctctttatggataccaaaagcct---aaaaatgagttgaagattgaggcttataaactttacgaggaggattgtaagtctaagggaat |
35886482 |
T |
|
| Q |
346 |
acttcccattcctaagcatgacgagatgggatttaagaaggcaatggag |
394 |
Q |
| |
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| || |||| |||||||| | ||||||||||||||||| ||||||||| |
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| T |
35886483 |
agttgccatctctaagcatcatgagatgggatttaagaaagcaatggag |
35886531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 394
Target Start/End: Original strand, 35902465 - 35902605
Alignment:
| Q |
251 |
ttaggccctttttatggatacaaagagccttcaataaatgagttgaggattgaggcttataagctttatgaggaggattgtacgttgaagaggatacttc |
350 |
Q |
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||||| ||| ||||||||||| || ||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||| || ||| | ||| | |
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| T |
35902465 |
ttaggtcctctttatggataccaaaagcct---aaaaatgagttgaagattgaggcgtataagctttatgaggaggattgtaagtctaagggaatagctg |
35902561 |
T |
|
| Q |
351 |
ccattcctaagcatgacgagatgggatttaagaaggcaatggag |
394 |
Q |
| |
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|||| |||||||| | ||||||||||||||||| ||||||||| |
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| T |
35902562 |
ccatctctaagcatcatgagatgggatttaagaaagcaatggag |
35902605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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