View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9360-LTR4-TNT-insertion-3 (Length: 424)
Name: F9360-LTR4-TNT-insertion-3
Description: F9360-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9360-LTR4-TNT-insertion-3 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 2762835 - 2762429
Alignment:
| Q |
8 |
aagtagacaacatgagaaaaactgtggggaaggcgaatctgggtgtacatgtattaggaactccatttcacgtgcggggtaggaaattaaatgcttcaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2762835 |
aagtagacaacatgagaaaaactgtggggaaggcgaatctgggtgtacatgtattaggaactccatttcacgtgcggggtaggaaattaaatgcttcaag |
2762736 |
T |
|
| Q |
108 |
aaataaaaatggagctttggtacactcctcaagctagatgatcaaatccaagagaggttggatatgacatggatccaaatctcagttaccacttgaaatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2762735 |
aaataaaaatggagctttggtacactcctcaagctagatgatcaaatccaagagaggttggatatgacatggatccaaatctcagttaccacttgaaatc |
2762636 |
T |
|
| Q |
208 |
atcttgatgaagtagtggagtttgttggcttgtatgagttatgacgcnnnnnnnnnnnnnntgtttgggtgggcaggtgaaagctttttcgattaaaagg |
307 |
Q |
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| T |
2762635 |
atcttgatgaagtagtggagtttgttggcttgtatgagttatgacgcggggggagggggggtgtttgggtgggcaggtgaaagctttttcgattaaaagg |
2762536 |
T |
|
| Q |
308 |
tctgcaaaagtgtagtttcttgaaatcgaatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2762535 |
tctgcaaaagtgtagtttcttgaaatcgaatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtatt |
2762436 |
T |
|
| Q |
408 |
atgatta |
414 |
Q |
| |
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| T |
2762435 |
atgatta |
2762429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 2768427 - 2768189
Alignment:
| Q |
8 |
aagtagacaacatgagaaaaactgtggggaaggcgaatctgggtgtacatgtattaggaactccatttcacgtgcggggtaggaaattaaatgcttcaag |
107 |
Q |
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||||||||| || ||| |||| ||| ||||||| |||||||||| ||| |||||||||||||||||||| | | |||| |||||| |||||| | |
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| T |
2768427 |
aagtagacatcaagaggaaaattgttgggaaggtgaatctgggt--acaggtattaggaactccatttcatgcgtgggggtggaaat-----gcttcagg |
2768335 |
T |
|
| Q |
108 |
aaataaaaatggagctttggtacactcctcaagctagatgatcaaatccaagagaggttggatatgacatggatccaaatctcagttaccacttgaaatc |
207 |
Q |
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|||| |||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || | |||||||| | || |||||||||||| |
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| T |
2768334 |
aaattaaaaaggagttttggtacactccttaagctggatgatcaaatccaagagaggttggatataactggaatccaaatgttggtcaccacttgaaata |
2768235 |
T |
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| Q |
208 |
atcttgatgaagtagtggagtttgttggcttgtatgagttatgacg |
253 |
Q |
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| T |
2768234 |
atcttgatgaagtagtggagtttgttggcctatatgagttatgacg |
2768189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 2758572 - 2758496
Alignment:
| Q |
336 |
aatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
414 |
Q |
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| T |
2758572 |
aatgataaaagctaaacaat--gcaataataccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
2758496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 2768074 - 2767998
Alignment:
| Q |
336 |
aatgataaaagctaaacaatatgcaacaa-taccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
414 |
Q |
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||||||||||| |||||||| |||| || |||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
2768074 |
aatgataaaagataaacaat--gcaataaataccaattcaatat-aacaagaaattcaattacgaattgtattatgatta |
2767998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 13025 - 12974
Alignment:
| Q |
363 |
aataccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
414 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13025 |
aatactaattcaatatgaataagaaattcaactatgaattgtattatgatta |
12974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 17795097 - 17795148
Alignment:
| Q |
363 |
aataccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
414 |
Q |
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| T |
17795097 |
aatactaattcaatatgaagaagaaattcaactatgaattgtattatgatta |
17795148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 28506508 - 28506429
Alignment:
| Q |
333 |
tcgaatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtattatgatta |
414 |
Q |
| |
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||||||||||| || |||||||| |||| |||| ||||||||||||| ||||||| ||||||| ||||| | |||||||| |
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| T |
28506508 |
tcgaatgataagagataaacaat--gcaataataacaattcaatatgattaagaaatccaactataaattggactatgatta |
28506429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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