View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9360-LTR4-TNT-insertion-4 (Length: 52)
Name: F9360-LTR4-TNT-insertion-4
Description: F9360-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9360-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 20462475 - 20462510
Alignment:
| Q |
7 |
atatctcaaattttatcaacggtgataataaaatta |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
20462475 |
atatctcaaattttatcaacggtgataataaaatta |
20462510 |
T |
|
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