View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9361-LTR4-TNT-insertion-1 (Length: 330)

Name: F9361-LTR4-TNT-insertion-1
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9361-LTR4-TNT-insertion-1
F9361-LTR4-TNT-insertion-1
[»] chr8 (2 HSPs)
chr8 (9-184)||(395045-395220)
chr8 (218-322)||(395254-395358)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 395045 - 395220
Alignment:
Q  9 tgagtgtgtgcctaaataaattttaattggagtcatgatcaaataaaatttatcannnnnnnaatcccaacacacaaatatgactacacctgtgtaagca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  395045 tgagtgtgtgcctaaataaattttaattggagtcatgatcaaataaaatttatcatttttttaatcccaacacacaaatatgactacacctgtgtaagca 395144  T
Q  109 aatactagatacttaaaggacaattccaacaaatgagtctatttagttttatatccaagtgaccaggcctaaggat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395145 aatactagatacttaaaggacaattccaacaaatgagtctatttagttttatatccaagtgaccaggcctaaggat 395220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 395254 - 395358
Alignment:
Q  218 ttaatgagtttgccaaataactcatgaaatgacaaacatgcttccatataattctgcatgggaaagatcaataaatgtggccaccgtctacatgcttcca 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395254 ttaatgagtttgcgaaataactcatgaaatgacaaacatgcttccatataattctgcatgggaaagatcaataaatgtggccaccgtctacatgcttcca 395353  T
Q  318 attgg 322  Q
    |||||    
T  395354 attgg 395358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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