View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-12 (Length: 565)
Name: F9361-LTR4-TNT-insertion-12
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 27549136 - 27548591
Alignment:
| Q |
10 |
atacacaagacgtagacacatgtacaaagatttacaaatgaaaagttatattgtttgttagttgagatgggtcggatttagctctttatttctagaggaa |
109 |
Q |
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| T |
27549136 |
atacacaagacgtagacacatgtacaaagatttacaaatgaaaagttatattgtttgttagttgagatgggtcggatttagctctttatttctagaggaa |
27549037 |
T |
|
| Q |
110 |
caaattgttggaatgctcgttatttcttcaatcatttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctactttataa |
209 |
Q |
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| T |
27549036 |
caaattgttggaatgctcgttatttcttcaatcatttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctactttataa |
27548937 |
T |
|
| Q |
210 |
catgatagctgtcctcatttataatcccctattctacttgataaacatgggtctattatgcaacacattcctcacacttgttacgagaactaacaatttt |
309 |
Q |
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| T |
27548936 |
catgatagctgtcctcatttataatcccctattctacttgataaacatgggtctattatgcaacacattcctcacacttgttacgagaactaacaatttt |
27548837 |
T |
|
| Q |
310 |
ctcgccaaatcaccacccttccacctcgattatacaggggaattgtccccaaaattcatgctacaagttaatttgcaaatctcaccctaagttaattatg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548836 |
ctcgccaaatcaccacccttccacctcgattatacaagggaattgtccccaaaattcatgctacaagttaatttgcaaatctcaccctaagttaattatg |
27548737 |
T |
|
| Q |
410 |
cactaacttgaggtttgaagagcttgcaagtacaagtacaggggtagccctgagcatgggcgggagggacagtcgtctagggaatgaatcttttttactt |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548736 |
cactaacttgaggtttgaagagcttgcaagtacaagtacaggggtagccctgagcatgggcgggagggacagtcgtctagggaatgaatcttttttactt |
27548637 |
T |
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| Q |
510 |
agtaatatatacatatatatttcttttttactcacattgattatta |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548636 |
agtaatatatacatatatatttcttttttactcacattgattatta |
27548591 |
T |
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