View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-14 (Length: 231)
Name: F9361-LTR4-TNT-insertion-14
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-14 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 2797728 - 2797514
Alignment:
| Q |
7 |
aatactaccggtcctgtgatttaaacaacctaattttggtgtcacgtttttatgcatttcacaattctatacataagtagttcatnnnnnnncttgatga |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2797728 |
aatactaccggtcctgtgatttaaacaacctaattttggtgtcacgtttttatgcatttcacaattctatacataagtagttcataaaaaaacttgatga |
2797629 |
T |
|
| Q |
107 |
atcaaattaaagaatacctaaaagaagagtgtgaaacttattgaatatgtatgtttaattgatttgggatgctgcaaaaaagaatattaaattgaaaatg |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797628 |
atcaaattaaagaatacctaaaagaagagtgtgaaacttattgaatatgtatgtttaattgatttgggatgctgcaaaaaagaatattaaattgaaaatg |
2797529 |
T |
|
| Q |
207 |
atgaatgtaatatta |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2797528 |
atgaatgtaatatta |
2797514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 2803904 - 2803690
Alignment:
| Q |
7 |
aatactaccggtcctgtgatttaaacaacctaattttggtgtcacgtttttatgcatttcacaattctatacataagtagttcatnnnnnnncttgatga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2803904 |
aatactaccggtcctgtgatttaaacaacctaattttggtgtcacgtttttatgcatttcacaattctatacataagtagttcataaaaaaacttgatga |
2803805 |
T |
|
| Q |
107 |
atcaaattaaagaatacctaaaagaagagtgtgaaacttattgaatatgtatgtttaattgatttgggatgctgcaaaaaagaatattaaattgaaaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2803804 |
atcaaattaaagaatacctaaaagaagagtgtgaaacttattgaatatgtatgtttaattgatttgggatgctgcaaaaaagaatattaaattgaaaatg |
2803705 |
T |
|
| Q |
207 |
atgaatgtaatatta |
221 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2803704 |
atgaatgtaatatta |
2803690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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