View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9361-LTR4-TNT-insertion-15 (Length: 740)
Name: F9361-LTR4-TNT-insertion-15
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 723; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 8 - 730
Target Start/End: Complemental strand, 26623786 - 26623064
Alignment:
| Q |
8 |
ctggtcgggatgaatctgaacctttcggccgtgctacatgtggtggatatgtttccaatagcttgaagacaacaccaacttatcgtattttaggggacat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623786 |
ctggtcgggatgaatctgaacctttcggccgtgctacatgtggtggatatgtttccaatagcttgaagacaacaccaacttatcgtattttaggggacat |
26623687 |
T |
|
| Q |
108 |
gtggaatgccaattattttgctacacacaaggaaaagaaattcatgtttcagaagaaactccgcgcttcgattcctattattcaatgcgtcggcttctca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623686 |
gtggaatgccaattattttgctacacacaaggaaaagaaattcatgtttcagaagaaactccgcgcttcgattcctattattcaatgcgtcggcttctca |
26623587 |
T |
|
| Q |
208 |
tgtactgatgatgcttgttctggtgggccagtcttaaatacccaagggaaaatcgtcgggatgattgtgggacaaagtaatgactgtcaaattgctatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623586 |
tgtactgatgatgcttgttctggtgggccagtcttaaatacccaagggaaaatcgtcgggatgattgtgggacaaagtaatgactgtcaaattgctatcc |
26623487 |
T |
|
| Q |
308 |
acgtaactgttcttgaaaaatttcttaaaaataatttaattgctgctcaagaagttgatgagaaagaaaaacaacctcaaggtggtggtcatagctctaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623486 |
acgtaactgttcttgaaaaatttcttaaaaataatttaattgctgctcaagaagttgatgagaaagaaaaacaacctcaaggtggtggtcatagctctaa |
26623387 |
T |
|
| Q |
408 |
ggttagttatttcgttcttgtttgtggtaaatttgatacactatttaaaaaatgctaattatatcattgtattctttacaggatgctaagcgagggaaaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623386 |
ggttagttatttcgttcttgtttgtggtaaatttgatacactatttaaaaaatgctaattatatcattgtattctttacaggatgctaagcgagggaaaa |
26623287 |
T |
|
| Q |
508 |
agaaagaactgatagacaaagatcctcctaaatgagagctcctcatgaatgcttcttctttctctattaattatctgtatagttatctatttgacatttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623286 |
agaaagaactgatagacaaagatcctcctaaatgagagctcctcatgaatgcttcttctttctctattaattatctgtatagttatctatttgacatttg |
26623187 |
T |
|
| Q |
608 |
tgtttgatgtaaaatctagtgacttgttaattgtacttattgagttgaattttggtgttattatgcttaagtgattggaagcaacctcttcccccattaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26623186 |
tgtttgatgtaaaatctagtgacttgttaattgtacttattgagttgaattttggtgttattatgcttaagtgattggaagcaacctcttcccccattaa |
26623087 |
T |
|
| Q |
708 |
ttttattttgaatagctagaatt |
730 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26623086 |
ttttattttgaatagctagaatt |
26623064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 490 times since January 2019
Visitors: 986