View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9361-LTR4-TNT-insertion-16 (Length: 421)

Name: F9361-LTR4-TNT-insertion-16
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9361-LTR4-TNT-insertion-16
F9361-LTR4-TNT-insertion-16
[»] chr1 (2 HSPs)
chr1 (10-412)||(3150953-3151355)
chr1 (58-301)||(15380116-15380360)
[»] chr7 (16 HSPs)
chr7 (62-341)||(3494798-3495078)
chr7 (58-359)||(24232476-24232778)
chr7 (117-269)||(24161228-24161381)
chr7 (65-316)||(24132455-24132707)
chr7 (88-361)||(24151068-24151342)
chr7 (81-341)||(24121999-24122260)
chr7 (140-341)||(24146097-24146298)
chr7 (110-355)||(24284008-24284255)
chr7 (91-315)||(24138389-24138614)
chr7 (111-398)||(24238059-24238347)
chr7 (76-318)||(24154266-24154509)
chr7 (94-170)||(21194258-21194335)
chr7 (148-283)||(21199526-21199661)
chr7 (298-356)||(24255661-24255719)
chr7 (150-227)||(23348062-23348139)
chr7 (243-275)||(24255599-24255631)
[»] chr2 (1 HSPs)
chr2 (81-378)||(10988778-10989076)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 3150953 - 3151355
Alignment:
Q  10 tagttgtgttagcatatctctgtgtttttgtcctctcttttgctatactactatggctgccattgaaactcaatccgttgaacaagttgacaaagttagc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3150953 tagttgtgttagcatatctctgtgtttttgtcctctcttttgctatactactatggctgccattgaaactcaatccgttgaacaagttgacaaagttagc 3151052  T
Q  110 ttgagaattatggtggacaaagaaaggaacaagttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151053 ttgagaattatggtggacaaagaaaggaacaagttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagg 3151152  T
Q  210 gactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151153 gactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaa 3151252  T
Q  310 tatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaactccacggaaatttatttccagcagatgaaactaaacattgatgacacaccaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151253 tatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaactccacggaaatttatttccagcagatgaaactaaacattgatgacacaccaa 3151352  T
Q  410 ttg 412  Q
    |||    
T  3151353 ttg 3151355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 301
Target Start/End: Original strand, 15380116 - 15380360
Alignment:
Q  58 tactatggctgccattgaaactcaatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaac-aagttctatatgctgag 156  Q
    ||||||||||| |  || |||||| |  ||||||||||||||| |||||||||||||| |||||||||| | |||||||||| ||||||||||||  |||    
T  15380116 tactatggctggcgatgcaactcagttagttgaacaagttgacgaagttagcttgagatttatggtggatagagaaaggaacaaagttctatatgtagag 15380215  T
Q  157 gctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtga 256  Q
    || ||||||||||| || |||  |||||| || || |||| ||| ||| |||||||||||||||||||     || ||||||||||||| || |||||||    
T  15380216 gcagggaaggattttgttgatactcttttcagcttcttaatatttcctttagggactattgcaagacttgcggctaaggagtcaaatatcgacgcagtga 15380315  T
Q  257 aacttggcagcataagctcattgtatcgaggtgtatcggatcttg 301  Q
    || |||| ||| | |||||||||||   | |||||||||||||||    
T  15380316 aatttggaagcttgagctcattgtacgaaagtgtatcggatcttg 15380360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 3495078 - 3494798
Alignment:
Q  62 atggctgccattgaaactcaatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaaca-agttctatatgctgaggctg 160  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||| || || | || ||||||||||| || | |||||| |||||||| || |    
T  3495078 atggctgcaattgaaactcaatcagttgaacaagttgacaaagttagcttgcgagttttagttgacaaagaaagaaatagagttctgtatgctgaagccg 3494979  T
Q  161 ggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaact 260  Q
    | |||||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||| |  ||||| |||| ||||||||||||||||||||| |    
T  3494978 gtaaggatttcgtcgatgttctctttagtttcttaacattgcctctaggtactattgcaagattagtttctaaggattcaaatattgaagcagtgaaatt 3494879  T
Q  261 tggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatgct 341  Q
    ||| ||||| |||||| | |||| | |||| ||  |  |||| ||||||||||||||||||||  | ||||||||||||||    
T  3494878 tggtagcattagctcactatatcaaagtgtgtcaaaatttgaccaacaatatctatggtcacatacttgcaaagaaatgct 3494798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 58 - 359
Target Start/End: Complemental strand, 24232778 - 24232476
Alignment:
Q  58 tactatggctgccattgaaactcaatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgag 156  Q
    |||||||||| ||||| ||||| |||| |||||||||||||| || ||| || |||||||| ||||||||||||||| |||||| ||| | |||||||||    
T  24232778 tactatggcttccattcaaactgaatcagttgaacaagttgataatgttcgcctgagaattttggtggacaaagaaaagaacaaagttgtgtatgctgag 24232679  T
Q  157 gctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtga 256  Q
    ||||||||||||||||| |||| ||| || || || |||||||| ||| ||||||||||||||||| |  |  || |||| |||||||||||||||||||    
T  24232678 gctgggaaggatttcgttgatgctctcttcagcttcttaacattgcctttagggactattgcaagatttgtggctaaggactcaaatattgaagcagtga 24232579  T
Q  257 aacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa 356  Q
    || |||||||||| ||||||||||||| | |||| ||  ||||||||||||||||| | |  ||||   | ||||| |||||||| ||||| ||||||||    
T  24232578 aatttggcagcattagctcattgtatcaaagtgtgtcaaatcttgatcaacaatatttgtcctcacttacttgcaaggaaatgctactgcaaccaagaaa 24232479  T
Q  357 ctc 359  Q
    |||    
T  24232478 ctc 24232476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 24161381 - 24161228
Alignment:
Q  117 ttatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactat 215  Q
    |||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||||||||||    
T  24161381 ttatggtggacaaagaaaggaagaaagttctatatgctgaggctggaaaggattttgtcgatgttcttttcagcttcttgacattacctctagggactat 24161282  T
Q  216 tgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcat 269  Q
    |||  ||||||| ||| | ||||||||||| ||||||||||   ||||||||||    
T  24161281 tgcttgactcatatctaaagagtcaaatatggaagcagtgaggtttggcagcat 24161228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 316
Target Start/End: Complemental strand, 24132707 - 24132455
Alignment:
Q  65 gctgccattgaaactcaatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctggga 163  Q
    |||| ||||| |||| ||||  ||||||||| ||||||||||| ||||||| || ||||||||||| ||| || ||| ||| | |||||||| || ||||    
T  24132707 gctgacattgcaactgaatcatttgaacaaggtgacaaagttaccttgagagttttggtggacaaacaaaagagcaaagttgtgtatgctgaagcaggga 24132608  T
Q  164 aggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttgg 263  Q
    ||||||| || |||| |||||| || || |||||||| ||| |||| ||||||||||||||  |  |  |||||||| ||||||||||||||| | ||||    
T  24132607 aggattttgttgatgctcttttcagcttcttaacattgcctttaggtactattgcaagacttgtggcaaaggagtcagatattgaagcagtgatatttgg 24132508  T
Q  264 cagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctat 316  Q
    |||||| |  ||| |||||| | ||||  | ||||||||||||||||||||||    
T  24132507 cagcattaattcactgtatcaaagtgtgacagatcttgatcaacaatatctat 24132455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 24151342 - 24151068
Alignment:
Q  88 tgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttg 186  Q
    |||||||||||||||||||| ||||||| || |||| || ||||| |  ||||| |||||||  |||||||||||||||||||| || ||||  || ||     
T  24151342 tgaacaagttgacaaagttaccttgagagttttggtcgataaagagaaaaacaaagttctattggctgaggctgggaaggattttgttgatgcactcttc 24151243  T
Q  187 agttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgag 286  Q
    || || |||||||| ||| |||| |||||||| |||||| |  || | ||||||||||| |||||||||||| |||| ||  | || ||| | |||| |     
T  24151242 agcttcttaacatttcctttaggtactattgctagactcgtggctgaagagtcaaatatcgaagcagtgaaatttggtagtttgagttcactatatcaaa 24151143  T
Q  287 gtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaactcca 361  Q
    ||||    |||||||||| ||||||||||||||||||  | |||||||||||||| ||  |||||||||||||||    
T  24151142 gtgtgaaagatcttgatccacaatatctatggtcacatacctgcaaagaaatgctacttaagccaagaaactcca 24151068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 81 - 341
Target Start/End: Complemental strand, 24122260 - 24121999
Alignment:
Q  81 aatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaac-aagttctatatgctgaggctgggaaggatttcgtcgatgt 179  Q
    |||| |||||||||| |||| |||||| ||||||| | ||||||||||||||||  ||| ||||| | |||||||| || ||||||||||| || ||||     
T  24122260 aatcagttgaacaaggtgacgaagttaccttgagagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgc 24122161  T
Q  180 tcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattg 279  Q
    |||||| || || ||||| |||||  |||| |||||| |||||||  |  || |||||||| ||||||||||||||| | |||||||| | ||  || |     
T  24122160 tcttttcagcttcttaaccttaccattaggtactatttcaagacttgtggctaaggagtcagatattgaagcagtgagatttggcagcctgagtacactt 24122061  T
Q  280 tatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatgct 341  Q
    |||| | ||||||| ||||||||| |||| |||||||||||  |  | ||||||||||||||    
T  24122060 tatcaaagtgtatcagatcttgatgaacactatctatggtccaatacctgcaaagaaatgct 24121999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 341
Target Start/End: Complemental strand, 24146298 - 24146097
Alignment:
Q  140 aagttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtc 239  Q
    ||||||| | ||| ||||| || |||||||| || |||||||||||||| || ||| |||| ||| ||||||| ||||||| |||| |  |  |||| ||    
T  24146298 aagttctgtttgcagaggcaggaaaggattttgttgatgttcttttgagcttcttatcattgcctttagggaccattgcaaaactcgtggcaaaggactc 24146199  T
Q  240 aaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatg 339  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| | |||| || |||||||||  ||||||||| ||||||||  | ||||| ||||||    
T  24146198 aaatattgaatcagtgaaatttggcagcattagctcattgtatcaaagtgtgtcagatcttgatacacaatatctttggtcacacacctgcaaggaaatg 24146099  T
Q  340 ct 341  Q
    ||    
T  24146098 ct 24146097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 355
Target Start/End: Original strand, 24284008 - 24284255
Alignment:
Q  110 ttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctag 208  Q
    |||||| |||||||||| |||||||| ||||| ||||||||| |||| || | ||||||||| || ||||| || || || || || || || ||  |||    
T  24284008 ttgagagttatggtggataaagaaagtaacaaagttctatatcctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 24284107  T
Q  209 ggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaactt-ggcagcataagctcattgtatcgaggtgtatcggatcttgatcaac 307  Q
    ||||||||||||||||| || ||   || |||||||||||||||||  || || |||||||| |||||| |||||| | |||||   |||||||||||||    
T  24284108 ggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaac 24284207  T
Q  308 aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaa 355  Q
    ||||| ||||  || |  | ||||| ||||||||||||||||||||||    
T  24284208 aatatttatgcacaaatacctgcaaggaaatgctgctgcagccaagaa 24284255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 24138614 - 24138389
Alignment:
Q  91 acaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagt 189  Q
    ||||||||||||||| | | | ||| || |||||||||| || |  ||||| ||||| | | ||||||| |  |||||||| || |||||||||||||||    
T  24138614 acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttactgaggcagataaggattttgttgatgttcttttgagt 24138515  T
Q  190 tttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtg 289  Q
    || |||||||||||  |||| ||||| ||| || || |   | | |||||||||||||||||||||| | ||||||||||||| ||| | |||| | |||    
T  24138514 ttcttaacattacccttaggtactatcgcaggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtg 24138415  T
Q  290 tatcggatcttgatcaacaatatcta 315  Q
    | || | |||||||||||||||||||    
T  24138414 tgtcagttcttgatcaacaatatcta 24138389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 111 - 398
Target Start/End: Original strand, 24238059 - 24238347
Alignment:
Q  111 tgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagg 209  Q
    ||||| |||||||||||  | |||||||||| ||| | ||||||||||| || |||||||| ||||||| ||| || ||||| |||||||| ||| ||||    
T  24238059 tgagagttatggtggacggaaaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 24238158  T
Q  210 gactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaa 309  Q
     ||||||||||||||     || || |||| ||||| | ||| || | | |||| ||| | || ||| || ||| | ||||| | ||||||||| |||||    
T  24238159 aactattgcaagacttgcggctaagcagtcgaatatcggagctgtaacagttggaagcctgagttcactgcatcaaagtgtagcagatcttgatgaacaa 24238258  T
Q  310 tatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaactccacggaaatttatttccagcagatgaaactaaacattga 398  Q
    ||||| ||| | || || ||||| |||||||| ||  ||||||| ||||||| |||| |||||| |||| | |||||| | ||||||||    
T  24238259 tatctctggacgcatgcctgcaaggaaatgctactcaagccaaggaactccatggaagtttattcccagaatatgaaattgaacattga 24238347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 318
Target Start/End: Complemental strand, 24154509 - 24154266
Alignment:
Q  76 aactcaatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtc 174  Q
    ||||||||| | |||||||||||  || ||||   ||||| || ||||||||||||  ||||| || ||| | |||||||| || | ||||||||||||     
T  24154509 aactcaatcagctgaacaagttgtgaatgttacgctgagagttttggtggacaaagcgaggaaaaaagttgtttatgctgaagcagagaaggatttcgtt 24154410  T
Q  175 gatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagct 274  Q
    |||||||| || || || |||||||| ||| |||| ||||||||||||||  | ||| | ||||| |||||||||||||| ||| ||   ||||| || |    
T  24154409 gatgttctgttaagcttcttaacattgcctttaggtactattgcaagacttgtatctaaagagtcgaatattgaagcagttaaatttaatagcattagtt 24154310  T
Q  275 cattgtatcgaggtgtatcggatcttgatcaacaatatctatgg 318  Q
    || |||||| | |||| || |||||| |  || |||||||||||    
T  24154309 cactgtatcaaagtgtttcagatcttaaagaagaatatctatgg 24154266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 21194258 - 21194335
Alignment:
Q  94 agttgacaaagttagcttgagaattatggtggacaaagaaaggaac-aagttctatatgctgaggctgggaaggattt 170  Q
    ||||||||||||||  |||||  ||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||    
T  21194258 agttgacaaagttacattgagggttatggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattt 21194335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 21199526 - 21199661
Alignment:
Q  148 tatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattg 247  Q
    ||||||||||| || |||||||| || |||| ||| ||  | || |||||||| ||| |||| ||||||||||||||  | ||  ||||||| |||||||    
T  21199526 tatgctgaggcaggaaaggattttgttgatgctctcttcggcttcttaacattgcctttaggaactattgcaagactagtgtccgaggagtcgaatattg 21199625  T
Q  248 aagcagtgaaacttggcagcataagctcattgtatc 283  Q
    ||||  ||||| |||||||||| |||||| ||||||    
T  21199626 aagctatgaaatttggcagcattagctcactgtatc 21199661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 24255661 - 24255719
Alignment:
Q  298 cttgatcaacaatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa 356  Q
    |||||| |||||||| ||||||||||  | |||||||||||||| |||| |||||||||    
T  24255661 cttgatgaacaatatatatggtcacatacctgcaaagaaatgctactgccgccaagaaa 24255719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 23348139 - 23348062
Alignment:
Q  150 tgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattgcaagactcat 227  Q
    |||||| || ||||| || || ||||||||||| || ||||| |||||||| ||  |||| |||||||||||||||||    
T  23348139 tgctgaagcagggaaagactttgtcgatgttctatttagtttcttaacattgccattaggaactattgcaagactcat 23348062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 24255599 - 24255631
Alignment:
Q  243 tattgaagcagtgaaacttggcagcataagctc 275  Q
    |||||||||||||||| ||||||||||||||||    
T  24255599 tattgaagcagtgaaatttggcagcataagctc 24255631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 378
Target Start/End: Original strand, 10988778 - 10989076
Alignment:
Q  81 aatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgt 179  Q
    |||| |||||| ||||||||||| |||  |||||| ||| |||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||| |||||    
T  10988778 aatctgttgaagaagttgacaaaattacgttgagagttaaggtggataaagaaagtaacaaagttctgtatgctgaggcagtgaaggatttcgttgatgt 10988877  T
Q  180 tcttttgagttttttaacattacctctagggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattg 279  Q
    ||| || || || |||||||| ||| ||||||||||||| |||||  |  ||   ||||||||||||||||||||  || |||| ||||| || ||| |     
T  10988878 tctcttcagcttcttaacattgcctttagggactattgcgagacttgtggctacagagtcaaatattgaagcagttcaatttggtagcattagttcacta 10988977  T
Q  280 tatcgaggtgtatcggatcttgatcaacaatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaactccacggaaatttatttccag 378  Q
    |||| | ||||    ||||||||||| |||||| |||||   ||  | |||||| ||||||| ||| ||||||||||||| ||||||| ||||| ||||    
T  10988978 tatcaaagtgtgaaagatcttgatcagcaatatttatggaatcaaacctgcaaaaaaatgctactgaagccaagaaactctacggaaacttattgccag 10989076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 524 times since January 2019
Visitors: 990