View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-17 (Length: 471)
Name: F9361-LTR4-TNT-insertion-17
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-17 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 10 - 463
Target Start/End: Complemental strand, 11042138 - 11041685
Alignment:
| Q |
10 |
atgtttgtacatatacataatcaagagtttactattatgtcatgaatatcatactaatctagggaaatactaggatcactaactgtataatacgataatt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11042138 |
atgtttgtacatatacataatcaagagtttactattatgtcatgaatatcatactaatctagggaaatactaggatcactaactgtataatacgataatt |
11042039 |
T |
|
| Q |
110 |
cttttcatactgtcataatcatatcatataattatattcatatcttattaagttagcgtggaacaaagaatattatgtgagttcattttactgaatggac |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11042038 |
cttttcatactgtcataatcatatcatataattatattcatatcttattaagttagcgtggaacaaagaatattatgtgagttcattttactgaatggac |
11041939 |
T |
|
| Q |
210 |
cgagttgagtaacccaaaacacattcctctggttggccgactaaattccctatatcagggttagaaccggactcctcagactatcgtgtggtttaccaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11041938 |
cgagttgagtaacccaaaacacattcctctggttggccgactaaattccctatatcagggttagaaccggactcctcagactatcgtgtggtttaccaac |
11041839 |
T |
|
| Q |
310 |
tagagtaaaaccatctagcataatctggagcctgcgagggacgcgacatatttgaatatatttctatcttagaataacaaacaatagtattacatacaat |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11041838 |
tagagtaaaaccatctagcataatctggagcctgcgagggacgcgacatatttgaatatatttctatcttagaataacaaacaatagtattacatacaat |
11041739 |
T |
|
| Q |
410 |
ggcagatacacatgcaataagttaggcctaatttaaagcttatctcactcatta |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11041738 |
ggcagatacacatgcaataagttaggcctaatttaaagcttatctcactcatta |
11041685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 3329330 - 3329205
Alignment:
| Q |
161 |
gttagcgtggaacaaagaatattatgtgagttcattttactgaatgga-ccgagttgagtaacccaaaacacattcctctggttggccgactaaattccc |
259 |
Q |
| |
|
|||||| | ||| ||| |||||||| |||||||||||||| |||||| |||||| ||||||||| | | ||||||||||| | | ||| ||||||||| |
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|
| T |
3329330 |
gttagcattgaataaacaatattatctgagttcattttacgaaatggatccgagtggagtaaccccagatacattcctctgct-gaccggataaattccc |
3329232 |
T |
|
| Q |
260 |
tatatcagggttagaaccggactcctc |
286 |
Q |
| |
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||| | |||| |||||| ||||||||| |
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| T |
3329231 |
tatctgagggctagaactggactcctc |
3329205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 351
Target Start/End: Complemental strand, 16080138 - 16079900
Alignment:
| Q |
114 |
tcatactgtcataatcatatcatataattatattcatatcttattaagttagcgtggaacaaagaatattatgtgagttcattttactgaatggaccgag |
213 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |
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|
| T |
16080138 |
tcatattgtcatattcatatcatgtaatcatagtcatatcttattaagttagcgtggaacaaacaatgttatctgagttcattttacggaatgagccgag |
16080039 |
T |
|
| Q |
214 |
ttgagtaacccaaaacacattcctctggttggccgactaaattccctat--atcagggttagaaccggactcctcagactat-cgtgtggtttaccaact |
310 |
Q |
| |
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| |||||||| |||||||||||| |||| || |||||||| |||| | ||| | |||||| | ||||||| ||||| |||||| || |||||| |
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| T |
16080038 |
tggagtaacc---tacacattcctctagttgaccagctaaattctctatcaaccagagctagaactgaactcctctaactatgtgtgtggatttccaact |
16079942 |
T |
|
| Q |
311 |
agagtaaaac-catctagcataatctggagcctgcgagggac |
351 |
Q |
| |
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|| | || | |||| ||||||||||||||||||| |||||| |
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| T |
16079941 |
agggagaatcacatccagcataatctggagcctgcaagggac |
16079900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 17303994 - 17303927
Alignment:
| Q |
159 |
aagttagcgtggaacaaagaatattatgtgagttcattttactgaatgga--ccgagttgagtaaccc |
224 |
Q |
| |
|
|||||||||| ||||||| | ||||| |||||||||||||| ||||||| |||||| ||||||||| |
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| T |
17303994 |
aagttagcgttgaacaaacataattatctgagttcattttacggaatggatcccgagtggagtaaccc |
17303927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 19210102 - 19210174
Alignment:
| Q |
116 |
atactgtcataatcatatcatataatt-atattcatatcttattaagttagcgtggaacaaagaatattatgt |
187 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||| ||||||||||| ||| ||||||| || ||||||| |
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| T |
19210102 |
atactgtcataatcatatcatatttttcatatacataagttattaagttatcgttgaacaaacaagattatgt |
19210174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 26075472 - 26075428
Alignment:
| Q |
161 |
gttagcgtggaacaaagaatattatgtgagttcattttactgaat |
205 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
26075472 |
gttagcgttgaacaaacaatattatctgagttcattttacggaat |
26075428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 8678473 - 8678573
Alignment:
| Q |
251 |
taaattccctatatcagggttagaaccggactcctcagactatcgtgtggtttaccaactagagtaaaa-ccatctagcataatctggagcctgcgaggg |
349 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| |||| ||||||||||||||||||| |||||| ||||| ||| |||||||||||| || |||| |
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|
| T |
8678473 |
taaattccctatatgagggctagaaccgcactcctcctacta-cgtgtggtttaccaactagggtaaaacccatccagcctaatctggagcccgcaaggg |
8678571 |
T |
|
| Q |
350 |
ac |
351 |
Q |
| |
|
|| |
|
|
| T |
8678572 |
ac |
8678573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 27085573 - 27085665
Alignment:
| Q |
128 |
tcatatcatataattatattcatatcttattaagttagcgtggaacaaagaatattatgtgagttcattttactgaatggaccgagttgagta |
220 |
Q |
| |
|
||||| ||| |||| ||||| ||||||| ||||||||||||||| |||| ||| |||| |||||| ||||||| ||||| |||||| ||||| |
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|
| T |
27085573 |
tcataacatgtaatcatatttatatcttgttaagttagcgtggatcaaacaatgttatctgagtttattttacggaatgagccgagtggagta |
27085665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 8887095 - 8887050
Alignment:
| Q |
161 |
gttagcgtggaacaaagaatattatgtgagttcattttactgaatg |
206 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
8887095 |
gttagcgttgaacaaacaatattatctgagttcattttacggaatg |
8887050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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