View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-18 (Length: 503)
Name: F9361-LTR4-TNT-insertion-18
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-18 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 25158955 - 25159399
Alignment:
| Q |
9 |
gttttgcgtccaagtgcaacatgtttgcatcaaggtgcaaatgtgcagtcaaaataattttttccttacaatagtgactaccgaagagagtaaaaaacaa |
108 |
Q |
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| T |
25158955 |
gttttgcgtccaagtgcaacatgtttgcatcaaggtgcaaatgtgcagtcaaaataattttttccttacaatagtgaccaccgaagagagtaaaaaacaa |
25159054 |
T |
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| Q |
109 |
accaataaagaaatatatatgatgcaataggtgtctggtgtgaaaactcccaaattatgtgtgtatgttttaattatcacttcttcaaaattacaaactt |
208 |
Q |
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| T |
25159055 |
accaataaagaaatatatatgatgcaataggtgtctggtgtgaaaactcccaaattatgtgtgtatgttttaattatcacttcttcaaaattacaaactt |
25159154 |
T |
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| Q |
209 |
aacacaaaatttaaaaattatgataattaccaaatataaagattgaaatattaaccttattttttaagcagaaatgtcattagtacaatctaaacacaca |
308 |
Q |
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| T |
25159155 |
aacacaaaatttaaaaattatgataattaccaaatataaagattgaaatattaaccttattttttaagcagaaatgtcattagtacaatctaaacacaca |
25159254 |
T |
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| Q |
309 |
cgcataaacacatacatgcgaacccgcacaaatatatatatcnnnnnnnnnnnnnnnnnnnnnnatttctactaagaagatttccattagacaatacatt |
408 |
Q |
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| T |
25159255 |
cgcataaacacatacatgcgaacccgcacaaatatatatatcgagagagagagaaagagagagaatttctactaagaagatttccattagacaatacatt |
25159354 |
T |
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| Q |
409 |
gggttctcaaaactccgatgtacaacatttattaagattttattc |
453 |
Q |
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| T |
25159355 |
gggttctcaaaactccgatgtacaacatttattaagattttattc |
25159399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 25163365 - 25163415
Alignment:
| Q |
374 |
tttctactaagaagatttccattagacaatacattgggttctcaaaactcc |
424 |
Q |
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| T |
25163365 |
tttctactaagaagattttcattagataatacattgggttctcaaaactcc |
25163415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 25162953 - 25162991
Alignment:
| Q |
179 |
taattatcacttcttcaaaattacaaacttaacacaaaa |
217 |
Q |
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| T |
25162953 |
taattatcagttcttcaaaattacaaacttaaaacaaaa |
25162991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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