View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-19 (Length: 282)
Name: F9361-LTR4-TNT-insertion-19
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-19 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 6992643 - 6992907
Alignment:
| Q |
8 |
ggccaaactcaagtgtcaaagaaaaagagtaatttctctcaaaagtgaatgtcacctaatcaatttgatgcagatatgtttgtattgatgcacacgtact |
107 |
Q |
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| T |
6992643 |
ggccaaactcaagtgtcaaagaaaaagagtaatttctctcaaaagtgaatgtcacctaatcaatttgatgcagatatgtttgtattgatgcacacgtact |
6992742 |
T |
|
| Q |
108 |
cctatatatgatacttgtacaaatcatagggttcgtcaaatgttatgttgatatcttatatacaatatgtgtacttagattttaggtctgaatttcatgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992743 |
cctatatatgatacttgtacaaatcatagggttcgtcaaatgttatgttgatatcttatatacaatatgtgtacttagattttaggtctgaatttcatgg |
6992842 |
T |
|
| Q |
208 |
gtatcaattgatcttaatttagcgctatggtaacttaaattgaatggacaaaatacaaaacatta |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6992843 |
gtatcaattgatcttaatttagcgctatggtaacttaaattgaatagacaaaatacaaaacatta |
6992907 |
T |
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