View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-22 (Length: 85)
Name: F9361-LTR4-TNT-insertion-22
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-22 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 71; Significance: 8e-33; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 22714 - 22784
Alignment:
| Q |
10 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22714 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
22784 |
T |
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Target: chr7 (Bit Score: 71; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 10197374 - 10197304
Alignment:
| Q |
10 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197374 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
10197304 |
T |
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Target: chr1 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 19457225 - 19457295
Alignment:
| Q |
10 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
80 |
Q |
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|||||| || |||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19457225 |
gatgtattctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattg |
19457295 |
T |
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Target: chr8 (Bit Score: 43; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 25025866 - 25025796
Alignment:
| Q |
10 |
gatgtactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattg |
80 |
Q |
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|||||| || |||||| | ||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
25025866 |
gatgtattctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattg |
25025796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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