View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-3 (Length: 446)
Name: F9361-LTR4-TNT-insertion-3
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 39320195 - 39320621
Alignment:
| Q |
10 |
caatggttgtctcaccctagaatagtacctcctcacttccatcaattcatcatctaaacccctgagaacatatataattcaattatagctgagagaactt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39320195 |
caatggttgtctcaccctagaatagtacctcctcacttccatcaattcatcatctaaacccctgagaacatatataattcaattatagctgagagaactt |
39320294 |
T |
|
| Q |
110 |
gtgctcaaagaaacctcaaagaaatatttcatgagtggaaattaaaaagaggaaattatatacgtcacataaccacaatattaaaccagtttcctcttat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39320295 |
gtgctcaaagaaacctcaaagaaatatttcatgagtggaaattaaaaagaggaaattatatacgtcacataaccacaatattaaaccagtttcctcttat |
39320394 |
T |
|
| Q |
210 |
cnnnnnnnaactataaatgacaaaagacgatttttgtgccacttggatccaagttggagcaattaaacctactccacatcctaaaagaaacagtctagac |
309 |
Q |
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| T |
39320395 |
ctttttttaactataaatgacaaaagacgatttttgtgccacttggatccaagttggagcaattaaacctactccacatcctaaaagaaacagtctagac |
39320494 |
T |
|
| Q |
310 |
attattccaattccaactagcaaacaacaatgtgaggtttttcatatgaaaaagatgatttccatatcatgagctaatgcattatgtggacacctagtca |
409 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39320495 |
attattccaattccaactagtaaacaacaatgtgaggtttttcatatgaaaaagatgatttccatatcatgagctaatgcattatgtggacacctagtca |
39320594 |
T |
|
| Q |
410 |
taaataattatatgtagaacagcatta |
436 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
39320595 |
taaataattatatgtagaacagcatta |
39320621 |
T |
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