View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9361-LTR4-TNT-insertion-7 (Length: 653)
Name: F9361-LTR4-TNT-insertion-7
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 26 - 644
Target Start/End: Original strand, 24944677 - 24945295
Alignment:
| Q |
26 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaacaccttaaacagatgattccggtggatata |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24944677 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaacaccttaaacagatgattccggtggatata |
24944776 |
T |
|
| Q |
126 |
tatttaacatcgctgaaggagtcatgtaacgccacaatgttttatatacactaaatatgttcttcttagtaattttcttgattcattatttgtttttcta |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24944777 |
tatttaacatcgctgaaggagtcatgtaacgccacaatgttttatatacactaaatatgttcttcttagtaattttcttgattcattatttgtttttcta |
24944876 |
T |
|
| Q |
226 |
tctaaaataattttcataaaactcattcagatttttatcaggagaaaaccctaaaaagttaccaaatatgcactaaattaatcaatgacaaaactttgat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24944877 |
tctaaaataattttcataaaactcattcagatttttatcaggagaaaaccctaaaaagttaccaaatatgcactaaattaatcaatgacaaaactttgat |
24944976 |
T |
|
| Q |
326 |
ttaagacaaacacataccactaggacaaccaaatccataaccaaaactttggtttttgttgcttaaactggacaatcttttatctttcattgcacttata |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24944977 |
ttaagacaaacacataccactaggacaaccaaatccataaccaaaactttggtttttgttgcttaaactggacaatcttttatctttcattgtacttata |
24945076 |
T |
|
| Q |
426 |
taatggtgtgattatttcttcgggttagaagatataattagatacaaacctaactaaagtattgataacacaagcttaatatctaatattgctgatgtgg |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24945077 |
taatggtgtgattatttcttcgggttagaagatataattagatacaaacctaactaaagtattgataacacaagcttaatatctaatattgctgatgtgg |
24945176 |
T |
|
| Q |
526 |
cttatggaatgaagcgtagatttttaactgtgacaagaaaaaaggtgcagaattatgcatttgagtaaggtgtggcagaagatataacagatgcaaaaat |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24945177 |
cttatggaatgaagcgtagatttttaactgtgacaagaaaaaaggtgcagaattatgcatttgagtaaggtgtggcagaagatataacagatgcaaaaat |
24945276 |
T |
|
| Q |
626 |
aaatgctgattcccaattg |
644 |
Q |
| |
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||||||||||||||||||| |
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| T |
24945277 |
aaatgctgattcccaattg |
24945295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 344 - 644
Target Start/End: Original strand, 24941867 - 24942168
Alignment:
| Q |
344 |
actaggacaaccaaatccataaccaaaactttggtttttgttgcttaaactggacaatcttttatctttcattgcacttatataatggtgtgattatttc |
443 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |||||||| ||||||||||||| |
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|
| T |
24941867 |
actaagacaaccaaatctataaccaaaactttgatttttgttgcttaaaagggacaatactttatctttcattatacctatataattgtgtgattatttc |
24941966 |
T |
|
| Q |
444 |
ttcgggttagaagatataattagatacaaacctaactaaagtattgataacacaagcttaatatctaatattgctgatgtggcttatggaatgaagcgta |
543 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
24941967 |
ttcgggttagaagatataattagctacaaacctatctaaagtattgatatcacaagcttaatatctaatattgctgacgtggcttatggaatgaagtgta |
24942066 |
T |
|
| Q |
544 |
gatttttaactgtgacaagaaaaaaggtgcagaattatgcatttgagtaaggtgtggcagaagatataacagatgcaaaaataaatgctga-ttcccaat |
642 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
24942067 |
gatttttaagtgtgacaagaaaaaaggtgcagaattatgcatttgagtaaggtgtggctgaagatatgacagatgcaaaaacaaatgctgatttcccaat |
24942166 |
T |
|
| Q |
643 |
tg |
644 |
Q |
| |
|
|| |
|
|
| T |
24942167 |
tg |
24942168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 24941804 - 24941863
Alignment:
| Q |
220 |
tttctatctaaaataattttcataaaactcattcagatttttatcaggagaaaaccctaa |
279 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24941804 |
tttctatctaaaattattttcataaaactcattcagatttttatcaggagaaaaccctaa |
24941863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 4436573 - 4436643
Alignment:
| Q |
27 |
catgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaaca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | || |||||||| ||| | |||||||||| |||| |
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|
| T |
4436573 |
catgaaccttggattacattatcaaagattttatgttgtcctgaaaggacacatatatgcatattgaaaca |
4436643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1290230 - 1290291
Alignment:
| Q |
26 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgca |
87 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||| ||||| || || ||||||||||| ||||| |
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|
| T |
1290230 |
ccatgaatcttgtattacattatcaaaggtttcctgctttcctggaaggatacacatatgca |
1290291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 4540344 - 4540420
Alignment:
| Q |
26 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaacacctta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | || || || |||||| | ||||| |||||||||||||| |
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|
| T |
4540344 |
ccatgaaccttggattacattatcaaaggttttctgttgtcttggaaagatacatagatgcaaattggaacacctta |
4540420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 19951574 - 19951487
Alignment:
| Q |
26 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaacaccttaaacagatgattcc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||| ||| | ||||||||||||| | ||||||||||| |
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|
| T |
19951574 |
ccatgaaccttggattatattatcaaaga-tttctcttatcttgtaaggatacacatatgtagattggaacacctt-atcagatgattcc |
19951487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 42010966 - 42011038
Alignment:
| Q |
26 |
ccatgaaccttggattacattatcaaagattttctgctatcgtgaaaggatacacaaatgcatattggaacac |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||||| | ||| |||||| |||||| |||||||||| |
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|
| T |
42010966 |
ccatgaaccttgtattacattatcaaaggtttccaactatcattgaagcatacactaatgcaaattggaacac |
42011038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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