View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9361-LTR4-TNT-insertion-8 (Length: 408)
Name: F9361-LTR4-TNT-insertion-8
Description: F9361-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9361-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 7922215 - 7922605
Alignment:
| Q |
8 |
cttactacaaacgtatacaaggtcctatgttgttggtaccaagaggttatgttccaatatgtgttggaacaaatgaagaaacatgtaagagatttatgat |
107 |
Q |
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| T |
7922215 |
cttactacaaacgtatacaaggtcctatgttgttggtaccaagaggttatgttccaatatgtgttggaacaaatgaagaaacatgtaagagatttatgat |
7922314 |
T |
|
| Q |
108 |
tcacacaagagcacttggtgatgtattttttcgtgaattgttggttaagtctgaggaggtatatggatttaggaatgaaggggttttgaggatcccattt |
207 |
Q |
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| T |
7922315 |
tcacacaagagcacttggtgatgtattttttcgtgaattgttggttaagtctgaggaggtatatggatttaggaatgaaggggttttgaggatcccattt |
7922414 |
T |
|
| Q |
208 |
gaagcacaagagtttgaggagtggtttaatggaaggtccaacaagattaaaattaagaggatggtaataccaatttgatttttagagatagtatacaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7922415 |
gaagcacaagagtttgaggagtggtttaatggaaggtccaacaagattaaaattaagaggatggtaataccaatttgatttttagagatagtatacaatt |
7922514 |
T |
|
| Q |
308 |
ctatccattgatcatgtttataggttggtgaatttgtcacttgtcaatgtatttgtgttcattctctatcaagatattgtttttgtaatta |
398 |
Q |
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| T |
7922515 |
ctatccattgatcatgtttataggttggtgaatttgtcacttgtcaatgtatttgtgttcattctctatcaagatattgtttttgtaatta |
7922605 |
T |
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