View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9364-LTR4-TNT-insertion-2 (Length: 765)
Name: F9364-LTR4-TNT-insertion-2
Description: F9364-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9364-LTR4-TNT-insertion-2 |
 | |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 765
Target Start/End: Complemental strand, 24773956 - 24773199
Alignment:
| Q |
8 |
gaattcagtctcctttagaagaggtaagccatctaatgagattaggaaatctgaaatatttgtttcggctttaaacctttgaggtgcatcatctctaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773956 |
gaattcagtctcctttagaagaggtaagccatctaatgagattaggaaatctgaaatatttgtttcggctttaaacctttgaggtgcatcatctctaaaa |
24773857 |
T |
|
| Q |
108 |
gtttcagattgggatcttctatgaaaatggtgtctgtgcactatcattgtcggtgcattatagtgatgataccaacttttactcgaagagactcnnnnnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773856 |
gtttcagattgggatcttctatgaaaatggtgtctgtgcattatcattgtcggtgcattatagtgatgataccaacttttactcgaagagactctttttt |
24773757 |
T |
|
| Q |
208 |
ncacttccggtttctttttgcatcaggctacaaagattgtcaaacaggcctattctgttctccctgattatgacaaaataatatctgcaatgcttactga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773756 |
tcacttccggtttctttttgcatcaggctacaaagattgtcaaacaggcctattctgttctccctgattatgacaaaataatatctgcaatgcttactga |
24773657 |
T |
|
| Q |
308 |
tggtgtatggctacttgcaaagacttgtaactttactcctggtattccggttgagcctatgctgtcagaaaaaatcacaagtgtatctgaagctctgaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773656 |
tggtgtatggctacttgcaaagacttgtaactttactcctggtattccggttgagcctatgctgtcagaaaaaatcacaagtgtatctgaagctctgaat |
24773557 |
T |
|
| Q |
408 |
aagttacggaatgcagagttgatttgtgaatacaaatacgatggagaacgtgctcaggtgatgcttcttagtcaagtttcccttcagacatatattcttt |
507 |
Q |
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| T |
24773556 |
aagttacggaatgcagagttgatttgtgaatacaaatacgatggagaacgtgctcaggtgatgcttcttagtcaagtttcccttcagacatatattcttt |
24773457 |
T |
|
| Q |
508 |
atgcttattctatgcattaaaatttgcattattgccacagatacattacaaggagaatggctcggtagagatttacagtagaagctcagaacgtaacact |
607 |
Q |
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| T |
24773456 |
atgcttattctatgcattaaaatttgcattattgccacagatacattacaaggagaatggctcggtagagatttacagtagaagctcagaacgtaacact |
24773357 |
T |
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| Q |
608 |
gggaagtttcccgatgttgtcgctgcagtttcaaggtaaaaaactgaattaagaatattaaatatatatgtgatctgtaacatctttttgttccagttat |
707 |
Q |
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| T |
24773356 |
gggaagtttcccgatgttgtcgctgcagtttcaaggtaaaaaactgaattaagaatattaaatatatatgtgatctgtaacatctttttgttccagttat |
24773257 |
T |
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| Q |
708 |
gatcattttcttaacaacatgaagctgcattacacggaattgttgattttttaccctt |
765 |
Q |
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| T |
24773256 |
gatcattttcttaacaacatgaagctgcattacacggaattgttgattttataccctt |
24773199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 649
Target Start/End: Original strand, 21000752 - 21001185
Alignment:
| Q |
217 |
gtttctttttgcatcaggctacaaagattgtcaaacaggcctattctgttctccctgattatgacaaaataatatctgcaatgcttactgatggtgtatg |
316 |
Q |
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||||| |||||||||||||| | || ||||| ||| | | ||||||||||| |||||||||||||| || | |||||| | |||| ||||||||||| |
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| T |
21000752 |
gtttcattttgcatcaggctgctaaaattgttaaaaaagtatattctgttcttcctgattatgacaagattgtgtctgcactccttaaggatggtgtatg |
21000851 |
T |
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| Q |
317 |
gctacttgcaaagacttgtaactttactcctggtattccggttgagcctatgctgtcagaaaaaatcacaagtgtatctgaagctctgaataagttacgg |
416 |
Q |
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| T |
21000852 |
ggaacttccaaagaagtgtgattttactcctggtgttccagttgggcctatgctgtcaaaagcaaccaagggtgtatctgaaattctaaataagtttcag |
21000951 |
T |
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| Q |
417 |
aatgcagagttgatttgtgaatacaaatacgatggagaacgtgctcaggtgatgcttcttagtcaagtttcccttcagacatatattctttatg---ctt |
513 |
Q |
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| T |
21000952 |
gatgtagagtttacgtgtgaatacaaatacgatggagagcgtgctcaggtgatgcttcatggtcatatattccatcagaaacacactgcttatgatactt |
21001051 |
T |
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| Q |
514 |
attctatgcattaaaatttgcattattgccacagatacattacaaggagaatggctcggtagagatttacagtagaagctcagaacgtaacactgggaag |
613 |
Q |
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| T |
21001052 |
at--tgtgtaataacattagttgtattgagacagatacatttcttggagaatggctcggtagagatttacagtagaaatgctgaacggaacactgggaag |
21001149 |
T |
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| Q |
614 |
tttcccgatgttgtcgctgcagtttcaaggtaaaaa |
649 |
Q |
| |
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| T |
21001150 |
tttcctgatgttgttactgcagtttcaaggtaaaaa |
21001185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 218 - 649
Target Start/End: Original strand, 20990526 - 20990959
Alignment:
| Q |
218 |
tttctttttgcatcaggctacaaagattgtcaaacaggcctattctgttctccctgattatgacaaaataatatctgcaatgcttactgatggtgtatgg |
317 |
Q |
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|||| ||||||||||||| |||||||||| ||| | | |||||||||||| || |||||||||||||| | |||||| | |||| |||||||||||| |
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| T |
20990526 |
tttcattttgcatcaggcagcaaagattgttaaaaaagtctattctgttcttcccgattatgacaaaattgtgtctgcactccttaaggatggtgtatgg |
20990625 |
T |
|
| Q |
318 |
ctacttgcaaagacttgtaactttactcctggtattccggttgagcctatgctgtcagaaaaaatcacaagtgtatctgaagctctgaataagttacgga |
417 |
Q |
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|||| |||||| ||| | |||||||||||| ||||||||| ||||||||||||| || || || |||||||||||| ||| |||||||| | | |
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| T |
20990626 |
gaacttccaaagaagtgtgattttactcctggtgttccggttgggcctatgctgtcaaaagcaaccaagagtgtatctgaaattctaaataagttccagg |
20990725 |
T |
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| Q |
418 |
atgcagagttgatttgtgaatacaaatacgatggagaacgtgctcaggtgatgcttcttagtcaagtttcccttcagacatatattct--ttatgcttat |
515 |
Q |
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| T |
20990726 |
gtgtagagtttacgtgtgagtacaaatacgatggagagcgtgctcaggtggtgcttcatagtcatatattccattagaatgctctgcttatgatacttat |
20990825 |
T |
|
| Q |
516 |
tctatgcattaaaatttgcattattgccacagatacattacaaggagaatggctcggtagagatttacagtagaagctcagaacgtaacactgggaagtt |
615 |
Q |
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| T |
20990826 |
tatgtgcaataacattagttgtatcgagacagatacatttcttggagaatggctcagtagagatttacagtagaaatgctgaacggaacactgggaagta |
20990925 |
T |
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| Q |
616 |
tcccgatgttgtcgctgcagtttcaaggtaaaaa |
649 |
Q |
| |
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||| |||||| | ||||||||||||||||||||| |
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| T |
20990926 |
tcctgatgttattgctgcagtttcaaggtaaaaa |
20990959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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