View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9365-LTR4-TNT-insertion-1 (Length: 406)
Name: F9365-LTR4-TNT-insertion-1
Description: F9365-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9365-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 1446779 - 1447121
Alignment:
| Q |
8 |
ctatctacttcttccgttgaagtttctggcggcttagacattttgttacggcagtgcggtgttcttcacggtggaattgtgtcgtaacagaatagggtta |
107 |
Q |
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| T |
1446779 |
ctatctacttcttccgttgaagtttctggcggcttagacattttgttacggcagtgcggtgttcttcacggtggaattgtgtcgtaacagaatagggtta |
1446878 |
T |
|
| Q |
108 |
gggttggaagctaatagggtttagaagcatcaacgattctattgtgtagccccaagcctatgcttaaatagggtttagcgtattcacgaattgggttgaa |
207 |
Q |
| |
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| T |
1446879 |
gggttggaagctaatagggtttagaagcatcaacgattctattgtgtagccccaagcctatgcttaaatagggtttagcgtattcacgaattgggttgaa |
1446978 |
T |
|
| Q |
208 |
ttgggatgggccaaattttaacgaattcaagtgaaataattaaccgtctttattttaatttgagtgtccattctctcaattaacctcgttacgggtcaag |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1446979 |
ttgggatgggccaaattttaacgaattcaagtgaaataattaaccgtctttattttaatttgagtgtccattctctcaattaacctcgttacgggtcaag |
1447078 |
T |
|
| Q |
308 |
catcaatatatcattcctatgccgttttaccgtttgatcttgc |
350 |
Q |
| |
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| T |
1447079 |
catcaatatatcattcctatgccgttttaccgtttgatcttgc |
1447121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 50234715 - 50234657
Alignment:
| Q |
278 |
ttctctcaattaacctcgttacgggtcaagcatcaatatatcattcctatgccgtttta |
336 |
Q |
| |
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|
| T |
50234715 |
ttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta |
50234657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 46954349 - 46954291
Alignment:
| Q |
278 |
ttctctcaattaacctcgttacgggtcaagcatcaatatatcattcctatgccgtttta |
336 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||| |||||| |||||||||||||| |
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|
| T |
46954349 |
ttctctcaattaatctcattacgggtcaagcttcaaagtatcatgcctatgccgtttta |
46954291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 10117591 - 10117635
Alignment:
| Q |
106 |
tagggttggaagctaatagggtttagaagcatcaacgattctatt |
150 |
Q |
| |
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||||||| ||||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
10117591 |
tagggttagaagcaaatagggtttagaagcaacaaggattctatt |
10117635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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