View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9365-LTR4-TNT-insertion-5 (Length: 214)
Name: F9365-LTR4-TNT-insertion-5
Description: F9365-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9365-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 41533307 - 41533109
Alignment:
| Q |
6 |
caatatcgttatgattatgattattgttttttgacgattatagttatgtcctagacctagttacatattaataggctattcaaaaattttattttgttac |
105 |
Q |
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| T |
41533307 |
caatatcgttatgattatgattattgttttttgacgattatagttatgtcctagacctagttacatattaataggctattcaaaaattttattttgttac |
41533208 |
T |
|
| Q |
106 |
atgtagagtagtactagaactaaggagcatagctaacaaatcaaacagtaggtgcaaagtagtttgtgggtgcattgtccaattcaatgacacagaatt |
204 |
Q |
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| T |
41533207 |
atgtagagtagtactagaactaaggagcatagctaacaaatcaaacagtaggtgcaaagtagtttgtgggtgcattgtccaattcaatgacacagaatt |
41533109 |
T |
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